Hb_005563_070

Information

Type -
Description -
Location Contig5563: 138096-138824
Sequence    

Annotation

kegg
ID rcu:RCOM_1449170
description hypothetical protein
nr
ID XP_012067198.1
description PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26757 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48544: 138101-139151
cDNA
(Sanger)
(ID:Location)		 044_J08.ab1: 138101-138889 , 046_B05.ab1: 138101-138896 , 048_O06.ab1: 138101-138847

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005563_070 0.0 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
2 Hb_000603_160 0.0440439672 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
3 Hb_189216_010 0.0631944396 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
4 Hb_000704_030 0.0791276196 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
5 Hb_001141_420 0.0802421558 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
6 Hb_005162_090 0.0818704201 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
7 Hb_002572_020 0.0844189283 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
8 Hb_009296_070 0.0855105568 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
9 Hb_000365_270 0.08561017 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
10 Hb_053709_050 0.0857014812 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_062226_130 0.0872771168 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
12 Hb_000069_640 0.0890790293 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
13 Hb_000120_810 0.0920463395 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
14 Hb_005653_070 0.092074165 - - K+ transport growth defect-like protein [Hevea brasiliensis]
15 Hb_000567_230 0.0929014841 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
16 Hb_001699_220 0.0947487811 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
17 Hb_003878_090 0.0950184659 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
18 Hb_000699_150 0.0956098452 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
19 Hb_000521_240 0.0964556503 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
20 Hb_026048_110 0.0968545388 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]

Gene co-expression network

sample Hb_005563_070 Hb_005563_070 Hb_000603_160 Hb_000603_160 Hb_005563_070--Hb_000603_160 Hb_189216_010 Hb_189216_010 Hb_005563_070--Hb_189216_010 Hb_000704_030 Hb_000704_030 Hb_005563_070--Hb_000704_030 Hb_001141_420 Hb_001141_420 Hb_005563_070--Hb_001141_420 Hb_005162_090 Hb_005162_090 Hb_005563_070--Hb_005162_090 Hb_002572_020 Hb_002572_020 Hb_005563_070--Hb_002572_020 Hb_000603_160--Hb_002572_020 Hb_000603_160--Hb_189216_010 Hb_000365_270 Hb_000365_270 Hb_000603_160--Hb_000365_270 Hb_000603_160--Hb_001141_420 Hb_004607_090 Hb_004607_090 Hb_000603_160--Hb_004607_090 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_008748_030 Hb_008748_030 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030 Hb_000120_810 Hb_000120_810 Hb_000704_030--Hb_000120_810 Hb_000704_030--Hb_189216_010 Hb_007839_020 Hb_007839_020 Hb_000704_030--Hb_007839_020 Hb_172426_030 Hb_172426_030 Hb_000704_030--Hb_172426_030 Hb_026198_010 Hb_026198_010 Hb_000704_030--Hb_026198_010 Hb_023371_020 Hb_023371_020 Hb_001141_420--Hb_023371_020 Hb_003058_120 Hb_003058_120 Hb_001141_420--Hb_003058_120 Hb_000220_100 Hb_000220_100 Hb_001141_420--Hb_000220_100 Hb_168978_010 Hb_168978_010 Hb_001141_420--Hb_168978_010 Hb_062226_130 Hb_062226_130 Hb_005162_090--Hb_062226_130 Hb_000738_020 Hb_000738_020 Hb_005162_090--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_005162_090--Hb_000869_080 Hb_139294_010 Hb_139294_010 Hb_005162_090--Hb_139294_010 Hb_012022_040 Hb_012022_040 Hb_005162_090--Hb_012022_040 Hb_000221_190 Hb_000221_190 Hb_005162_090--Hb_000221_190 Hb_002316_140 Hb_002316_140 Hb_002572_020--Hb_002316_140 Hb_002413_010 Hb_002413_010 Hb_002572_020--Hb_002413_010 Hb_000365_230 Hb_000365_230 Hb_002572_020--Hb_000365_230 Hb_000173_310 Hb_000173_310 Hb_002572_020--Hb_000173_310 Hb_183433_010 Hb_183433_010 Hb_002572_020--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.3648 66.4496 80.4755 86.1712 22.8999 26.9176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.3429 60.6804 48.8287 43.0162 65.4974

CAGE analysis