Hb_008748_030

Information

Type -
Description -
Location Contig8748: 16231-17505
Sequence    

Annotation

kegg
ID rcu:RCOM_0513690
description hypothetical protein
nr
ID XP_002526903.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8C729
description Protein FAM126B OS=Mus musculus GN=Fam126b PE=2 SV=1
trembl
ID B9SLN4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0513690 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein mtl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61228: 11554-17553 , PASA_asmbl_61229: 15937-17447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008748_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000227_160 0.0493771605 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
3 Hb_000012_310 0.0517328005 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
4 Hb_006452_120 0.0595887546 - - PREDICTED: protein FAM188A [Jatropha curcas]
5 Hb_000574_450 0.065503472 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
6 Hb_028487_160 0.0688511274 - - clathrin assembly protein, putative [Ricinus communis]
7 Hb_000778_010 0.0702803041 - - hypothetical protein [Bacillus subtilis]
8 Hb_002272_030 0.0705848099 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
9 Hb_189216_010 0.0708075608 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
10 Hb_002042_050 0.0735470629 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
11 Hb_000109_180 0.0737016679 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
12 Hb_000046_500 0.0739518892 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
13 Hb_020178_040 0.0740939404 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012262_030 0.0741288883 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
15 Hb_006059_010 0.0776495365 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
16 Hb_010515_020 0.0806581114 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
17 Hb_000023_300 0.0819727133 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
18 Hb_000322_080 0.0825372809 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
19 Hb_000567_230 0.0827005112 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
20 Hb_005653_070 0.0836466712 - - K+ transport growth defect-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_008748_030 Hb_008748_030 Hb_000227_160 Hb_000227_160 Hb_008748_030--Hb_000227_160 Hb_000012_310 Hb_000012_310 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_000227_160--Hb_028487_160 Hb_012262_030 Hb_012262_030 Hb_000227_160--Hb_012262_030 Hb_000367_090 Hb_000367_090 Hb_000227_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190 Hb_000012_310--Hb_006452_120 Hb_001789_150 Hb_001789_150 Hb_000012_310--Hb_001789_150 Hb_006059_010 Hb_006059_010 Hb_000012_310--Hb_006059_010 Hb_000012_310--Hb_000574_450 Hb_002660_170 Hb_002660_170 Hb_000012_310--Hb_002660_170 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_006452_120--Hb_000574_450 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_029243_030 Hb_029243_030 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_000574_450--Hb_010515_020 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140 Hb_028487_160--Hb_006452_120 Hb_004994_020 Hb_004994_020 Hb_028487_160--Hb_004994_020 Hb_028487_160--Hb_000367_090 Hb_028487_160--Hb_008289_040 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0038 20.1179 20.8574 35.3628 9.64485 14.0533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9474 19.4497 22.2171 25.2499 24.045

CAGE analysis