Hb_000663_060

Information

Type -
Description -
Location Contig663: 69791-76031
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30580g
description POPTRDRAFT_1069657; TIP41-like family protein
nr
ID KDP44444.1
description hypothetical protein JCGZ_16277 [Jatropha curcas]
swissprot
ID Q54MI6
description TIP41-like protein OS=Dictyostelium discoideum GN=tiprl PE=3 SV=1
trembl
ID A0A067LJH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16277 PE=4 SV=1
Gene Ontology
ID GO:0005829
description tip41-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53096: 69805-76002 , PASA_asmbl_53097: 70184-70322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000663_060 0.0 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
2 Hb_001828_180 0.0508118455 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
3 Hb_000778_010 0.0520334635 - - hypothetical protein [Bacillus subtilis]
4 Hb_001269_130 0.0600866493 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
5 Hb_000363_190 0.0630809686 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
6 Hb_023001_040 0.0679661419 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
7 Hb_163175_010 0.0700327559 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
8 Hb_005271_040 0.0709184014 - - PREDICTED: serine racemase [Jatropha curcas]
9 Hb_000080_130 0.0719662027 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
10 Hb_004545_110 0.0750669876 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
11 Hb_003058_120 0.076940508 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
12 Hb_000260_470 0.0773925189 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
13 Hb_164390_010 0.0774335839 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
14 Hb_001269_600 0.0775376628 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_007894_150 0.0775490479 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
16 Hb_000365_230 0.0783416673 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
17 Hb_000853_150 0.0784500683 - - Fumarase 1 isoform 2 [Theobroma cacao]
18 Hb_000167_010 0.0787258267 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008616_050 0.0791725493 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
20 Hb_159809_070 0.0793285485 - - phospholipase A-2-activating protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000663_060 Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_000663_060--Hb_001828_180 Hb_000778_010 Hb_000778_010 Hb_000663_060--Hb_000778_010 Hb_001269_130 Hb_001269_130 Hb_000663_060--Hb_001269_130 Hb_000363_190 Hb_000363_190 Hb_000663_060--Hb_000363_190 Hb_023001_040 Hb_023001_040 Hb_000663_060--Hb_023001_040 Hb_163175_010 Hb_163175_010 Hb_000663_060--Hb_163175_010 Hb_001828_180--Hb_000363_190 Hb_001828_180--Hb_000778_010 Hb_001828_180--Hb_023001_040 Hb_002301_100 Hb_002301_100 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_000364_050 Hb_000364_050 Hb_001269_130--Hb_000364_050 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150 Hb_000409_050 Hb_000409_050 Hb_000363_190--Hb_000409_050 Hb_000398_060 Hb_000398_060 Hb_000363_190--Hb_000398_060 Hb_002232_360 Hb_002232_360 Hb_000363_190--Hb_002232_360 Hb_000363_190--Hb_002301_100 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010 Hb_163175_010--Hb_164390_010 Hb_171900_090 Hb_171900_090 Hb_163175_010--Hb_171900_090 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39461 5.97614 10.7263 11.2246 5.94673 5.80922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.56946 9.69721 7.25314 11.6817 9.2686

CAGE analysis