Hb_023001_040

Information

Type -
Description -
Location Contig23001: 38276-43526
Sequence    

Annotation

kegg
ID tcc:TCM_021658
description Metallopeptidase M24 family protein isoform 1
nr
ID XP_007026646.1
description Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
swissprot
ID M1CZC0
description ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum GN=EBP1 PE=2 SV=1
trembl
ID A0A061ER94
description Metallopeptidase M24 family protein isoform 1 OS=Theobroma cacao GN=TCM_021658 PE=4 SV=1
Gene Ontology
ID GO:0005730
description proliferation-associated protein 2g4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24091: 38387-43461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023001_040 0.0 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
2 Hb_003058_120 0.058019684 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
3 Hb_149985_010 0.0598377541 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
4 Hb_005588_060 0.0658943262 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
5 Hb_000663_060 0.0679661419 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
6 Hb_001828_180 0.0694677332 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
7 Hb_000167_010 0.0703917756 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000778_010 0.0705271238 - - hypothetical protein [Bacillus subtilis]
9 Hb_000853_150 0.0707158026 - - Fumarase 1 isoform 2 [Theobroma cacao]
10 Hb_000574_450 0.0710460314 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
11 Hb_006452_100 0.0717155853 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
12 Hb_004108_220 0.07360329 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
13 Hb_005914_170 0.0738506769 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
14 Hb_002357_060 0.0739265564 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
15 Hb_029243_030 0.074357316 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
16 Hb_001016_120 0.0743678463 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
17 Hb_001671_100 0.075088166 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
18 Hb_004109_340 0.0756273921 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
19 Hb_000392_430 0.077407247 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
20 Hb_001189_070 0.0791912652 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_023001_040 Hb_023001_040 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_003058_120--Hb_005588_060 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_003058_120--Hb_000167_010 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_005054_110 Hb_005054_110 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_002936_010 Hb_002936_010 Hb_005588_060--Hb_002936_010 Hb_006570_080 Hb_006570_080 Hb_005588_060--Hb_006570_080 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_000173_280 Hb_000173_280 Hb_005588_060--Hb_000173_280 Hb_000663_060--Hb_001828_180 Hb_000778_010 Hb_000778_010 Hb_000663_060--Hb_000778_010 Hb_001269_130 Hb_001269_130 Hb_000663_060--Hb_001269_130 Hb_000363_190 Hb_000363_190 Hb_000663_060--Hb_000363_190 Hb_163175_010 Hb_163175_010 Hb_000663_060--Hb_163175_010 Hb_001828_180--Hb_000363_190 Hb_001828_180--Hb_000778_010 Hb_002301_100 Hb_002301_100 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_000069_720 Hb_000069_720 Hb_000167_010--Hb_000069_720 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1631 31.8019 38.0109 61.6099 25.7233 30.3438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.9665 56.5826 38.1022 64.0734 41.6662

CAGE analysis