Hb_002301_100

Information

Type -
Description -
Location Contig2301: 104622-120956
Sequence    

Annotation

kegg
ID rcu:RCOM_1673250
description glycogen phosphorylase, putative (EC:2.4.1.1)
nr
ID KDP21008.1
description hypothetical protein JCGZ_21479 [Jatropha curcas]
swissprot
ID Q00766
description Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3
trembl
ID A0A067JE17
description Alpha-1,4 glucan phosphorylase OS=Jatropha curcas GN=JCGZ_21479 PE=3 SV=1
Gene Ontology
ID GO:0008184
description glycogen phosphorylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24117: 103825-107409 , PASA_asmbl_24118: 109834-111709 , PASA_asmbl_24119: 113013-114541 , PASA_asmbl_24120: 114905-116951 , PASA_asmbl_24121: 117123-117941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_100 0.0 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
2 Hb_000398_060 0.0580172826 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
3 Hb_012733_040 0.0666875472 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
4 Hb_001828_180 0.0694849752 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
5 Hb_000363_190 0.0699281981 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
6 Hb_001242_120 0.0756587048 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
7 Hb_001493_150 0.0766277477 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
8 Hb_000120_370 0.0781365476 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
9 Hb_002093_060 0.0797086409 - - phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_005648_010 0.0822649136 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
11 Hb_001269_600 0.0823998902 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_003159_050 0.0847374114 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_002439_010 0.0859547634 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
14 Hb_000167_010 0.0878086603 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005725_130 0.0901555918 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
16 Hb_011224_160 0.0901629879 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
17 Hb_021576_010 0.0915307148 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
18 Hb_000663_060 0.0920075729 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
19 Hb_000510_340 0.0920228837 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
20 Hb_006059_030 0.0926093881 - - glutamate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002301_100 Hb_002301_100 Hb_000398_060 Hb_000398_060 Hb_002301_100--Hb_000398_060 Hb_012733_040 Hb_012733_040 Hb_002301_100--Hb_012733_040 Hb_001828_180 Hb_001828_180 Hb_002301_100--Hb_001828_180 Hb_000363_190 Hb_000363_190 Hb_002301_100--Hb_000363_190 Hb_001242_120 Hb_001242_120 Hb_002301_100--Hb_001242_120 Hb_001493_150 Hb_001493_150 Hb_002301_100--Hb_001493_150 Hb_005288_130 Hb_005288_130 Hb_000398_060--Hb_005288_130 Hb_000398_060--Hb_000363_190 Hb_000398_060--Hb_001828_180 Hb_000398_060--Hb_012733_040 Hb_001269_130 Hb_001269_130 Hb_000398_060--Hb_001269_130 Hb_012733_040--Hb_001242_120 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_000364_050 Hb_000364_050 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_000663_060 Hb_000663_060 Hb_001828_180--Hb_000663_060 Hb_001828_180--Hb_000363_190 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010 Hb_000363_190--Hb_000663_060 Hb_000409_050 Hb_000409_050 Hb_000363_190--Hb_000409_050 Hb_002232_360 Hb_002232_360 Hb_000363_190--Hb_002232_360 Hb_005725_130 Hb_005725_130 Hb_001242_120--Hb_005725_130 Hb_002928_090 Hb_002928_090 Hb_001242_120--Hb_002928_090 Hb_001051_050 Hb_001051_050 Hb_001242_120--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_001242_120--Hb_003878_150 Hb_009615_060 Hb_009615_060 Hb_001493_150--Hb_009615_060 Hb_012393_030 Hb_012393_030 Hb_001493_150--Hb_012393_030 Hb_001221_020 Hb_001221_020 Hb_001493_150--Hb_001221_020 Hb_005648_010 Hb_005648_010 Hb_001493_150--Hb_005648_010 Hb_021576_010 Hb_021576_010 Hb_001493_150--Hb_021576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16889 1.14894 2.35708 2.65942 1.39421 1.22721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78581 1.92582 1.11669 3.80904 2.95847

CAGE analysis