Hb_004452_120

Information

Type -
Description -
Location Contig4452: 108682-116324
Sequence    

Annotation

kegg
ID rcu:RCOM_0553580
description Adaptin ear-binding coat-associated protein, putative
nr
ID XP_012079048.1
description PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
swissprot
ID Q681Q7
description Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1
trembl
ID B9SGK0
description Adaptin ear-binding coat-associated protein, putative OS=Ricinus communis GN=RCOM_0553580 PE=4 SV=1
Gene Ontology
ID GO:0005634
description adaptin ear-binding coat-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42965: 108673-113370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004452_120 0.0 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
2 Hb_012150_030 0.0513754005 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_010863_050 0.058684384 - - OTU domain-containing protein 6B, putative [Ricinus communis]
4 Hb_133702_010 0.0613715127 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000364_050 0.0625169039 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
6 Hb_000061_180 0.0652182838 - - exonuclease, putative [Ricinus communis]
7 Hb_035273_020 0.0706220839 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
8 Hb_012733_040 0.0722097908 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
9 Hb_003053_110 0.0724381009 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
10 Hb_000212_230 0.0744673038 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
11 Hb_001195_400 0.0747900202 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
12 Hb_000080_130 0.0753595142 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
13 Hb_000212_440 0.0753823005 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_003266_030 0.0761720607 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
15 Hb_005800_030 0.0763975984 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
16 Hb_000167_110 0.0778873721 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
17 Hb_001946_390 0.0781538196 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
18 Hb_000078_140 0.0792463555 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
19 Hb_048093_010 0.0801917793 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
20 Hb_000721_030 0.0819208201 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004452_120 Hb_004452_120 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_010863_050 Hb_010863_050 Hb_004452_120--Hb_010863_050 Hb_133702_010 Hb_133702_010 Hb_004452_120--Hb_133702_010 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050 Hb_000061_180 Hb_000061_180 Hb_004452_120--Hb_000061_180 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020 Hb_003053_110 Hb_003053_110 Hb_012150_030--Hb_003053_110 Hb_012150_030--Hb_010863_050 Hb_134849_010 Hb_134849_010 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_000941_100 Hb_000941_100 Hb_012150_030--Hb_000941_100 Hb_000304_070 Hb_000304_070 Hb_010863_050--Hb_000304_070 Hb_000212_230 Hb_000212_230 Hb_010863_050--Hb_000212_230 Hb_002675_250 Hb_002675_250 Hb_010863_050--Hb_002675_250 Hb_010863_050--Hb_035273_020 Hb_005800_030 Hb_005800_030 Hb_133702_010--Hb_005800_030 Hb_004545_110 Hb_004545_110 Hb_133702_010--Hb_004545_110 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_007975_060 Hb_007975_060 Hb_133702_010--Hb_007975_060 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_001269_130 Hb_001269_130 Hb_000364_050--Hb_001269_130 Hb_012733_040 Hb_012733_040 Hb_000364_050--Hb_012733_040 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_000364_050--Hb_010863_050 Hb_000375_390 Hb_000375_390 Hb_000061_180--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_000061_180--Hb_000023_260 Hb_000061_180--Hb_007975_060 Hb_000061_180--Hb_133702_010 Hb_002157_120 Hb_002157_120 Hb_000061_180--Hb_002157_120 Hb_000212_440 Hb_000212_440 Hb_035273_020--Hb_000212_440 Hb_001195_400 Hb_001195_400 Hb_035273_020--Hb_001195_400 Hb_004846_220 Hb_004846_220 Hb_035273_020--Hb_004846_220 Hb_041290_020 Hb_041290_020 Hb_035273_020--Hb_041290_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.25011 6.61966 18.1055 15.7317 7.01189 8.06114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6865 11.0493 8.95982 11.641 20.6015

CAGE analysis