Hb_006059_030

Information

Type -
Description -
Location Contig6059: 22049-25575
Sequence    

Annotation

kegg
ID rcu:RCOM_1502760
description glutamate dehydrogenase, putative (EC:1.4.1.3)
nr
ID XP_002511037.1
description glutamate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q38946
description Glutamate dehydrogenase 2 OS=Arabidopsis thaliana GN=GDH2 PE=1 SV=1
trembl
ID B9RA12
description Glutamate dehydrogenase OS=Ricinus communis GN=RCOM_1502760 PE=3 SV=1
Gene Ontology
ID GO:0016639
description glutamate dehydrogenase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50754: 22045-25438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006059_030 0.0 - - glutamate dehydrogenase, putative [Ricinus communis]
2 Hb_012393_030 0.0677689966 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
3 Hb_000364_050 0.0717485489 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
4 Hb_012733_040 0.0775307712 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
5 Hb_005976_080 0.0800649887 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
6 Hb_000107_270 0.0827216487 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
7 Hb_001195_400 0.0846886542 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
8 Hb_001910_010 0.0848384678 - - Dual specificity protein phosphatase, putative [Ricinus communis]
9 Hb_002078_340 0.0852074239 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
10 Hb_000185_220 0.0880269334 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
11 Hb_003159_050 0.0882381633 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_094970_010 0.0889802992 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
13 Hb_035273_020 0.0896149703 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
14 Hb_005601_040 0.0917622483 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
15 Hb_002301_100 0.0926093881 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
16 Hb_001975_150 0.0939733726 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
17 Hb_000656_010 0.0977465156 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
18 Hb_001493_150 0.0978446492 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
19 Hb_001946_390 0.0980412833 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
20 Hb_000665_140 0.0995405797 - - PREDICTED: protein MEMO1 [Jatropha curcas]

Gene co-expression network

sample Hb_006059_030 Hb_006059_030 Hb_012393_030 Hb_012393_030 Hb_006059_030--Hb_012393_030 Hb_000364_050 Hb_000364_050 Hb_006059_030--Hb_000364_050 Hb_012733_040 Hb_012733_040 Hb_006059_030--Hb_012733_040 Hb_005976_080 Hb_005976_080 Hb_006059_030--Hb_005976_080 Hb_000107_270 Hb_000107_270 Hb_006059_030--Hb_000107_270 Hb_001195_400 Hb_001195_400 Hb_006059_030--Hb_001195_400 Hb_000841_050 Hb_000841_050 Hb_012393_030--Hb_000841_050 Hb_003159_050 Hb_003159_050 Hb_012393_030--Hb_003159_050 Hb_012393_030--Hb_001195_400 Hb_001493_150 Hb_001493_150 Hb_012393_030--Hb_001493_150 Hb_005601_040 Hb_005601_040 Hb_012393_030--Hb_005601_040 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_001269_130 Hb_001269_130 Hb_000364_050--Hb_001269_130 Hb_000364_050--Hb_012733_040 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_001242_120 Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_012733_040--Hb_001195_400 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_012733_040--Hb_004452_120 Hb_012733_040--Hb_003159_050 Hb_015675_040 Hb_015675_040 Hb_005976_080--Hb_015675_040 Hb_004159_020 Hb_004159_020 Hb_005976_080--Hb_004159_020 Hb_000656_010 Hb_000656_010 Hb_005976_080--Hb_000656_010 Hb_003878_150 Hb_003878_150 Hb_005976_080--Hb_003878_150 Hb_027073_020 Hb_027073_020 Hb_005976_080--Hb_027073_020 Hb_005976_080--Hb_001195_400 Hb_000107_270--Hb_012393_030 Hb_000174_260 Hb_000174_260 Hb_000107_270--Hb_000174_260 Hb_000107_270--Hb_000364_050 Hb_000107_270--Hb_012733_040 Hb_005276_040 Hb_005276_040 Hb_000107_270--Hb_005276_040 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_000185_220 Hb_000185_220 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.23048 5.24405 12.3981 11.9897 4.98164 6.93885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6822 11.52 10.546 18.1039 20.1186

CAGE analysis