Hb_170138_010

Information

Type -
Description -
Location Contig170138: 2061-3891
Sequence    

Annotation

kegg
ID rcu:RCOM_1626580
description hypothetical protein
nr
ID XP_002527249.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q68CZ6
description HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1 SV=1
trembl
ID B9SMN0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1626580 PE=4 SV=1
Gene Ontology
ID GO:0005634
description haus augmin-like complex subunit 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170138_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003206_110 0.045883645 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
3 Hb_001195_400 0.0619922115 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
4 Hb_000185_220 0.0727418288 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
5 Hb_004046_030 0.0778877091 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
6 Hb_000359_210 0.0782359998 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000684_210 0.0803626968 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
8 Hb_002928_090 0.081696147 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
9 Hb_006277_010 0.0817118931 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
10 Hb_005725_130 0.0850753235 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
11 Hb_000656_010 0.0851193227 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
12 Hb_000014_040 0.0852666223 - - conserved hypothetical protein [Ricinus communis]
13 Hb_074197_040 0.0857918821 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
14 Hb_005976_080 0.0887718182 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
15 Hb_005601_040 0.0889046217 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
16 Hb_000116_130 0.0889389299 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
17 Hb_005800_030 0.0903945334 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
18 Hb_003878_150 0.0913922511 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
19 Hb_001946_390 0.0933869796 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
20 Hb_002392_010 0.0935513329 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_170138_010 Hb_170138_010 Hb_003206_110 Hb_003206_110 Hb_170138_010--Hb_003206_110 Hb_001195_400 Hb_001195_400 Hb_170138_010--Hb_001195_400 Hb_000185_220 Hb_000185_220 Hb_170138_010--Hb_000185_220 Hb_004046_030 Hb_004046_030 Hb_170138_010--Hb_004046_030 Hb_000359_210 Hb_000359_210 Hb_170138_010--Hb_000359_210 Hb_000684_210 Hb_000684_210 Hb_170138_010--Hb_000684_210 Hb_003206_110--Hb_004046_030 Hb_003206_110--Hb_000185_220 Hb_003206_110--Hb_001195_400 Hb_003206_110--Hb_000359_210 Hb_006277_010 Hb_006277_010 Hb_003206_110--Hb_006277_010 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_001195_400--Hb_000359_210 Hb_001195_400--Hb_000185_220 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_004046_030--Hb_006277_010 Hb_004046_030--Hb_000185_220 Hb_000800_090 Hb_000800_090 Hb_004046_030--Hb_000800_090 Hb_012678_020 Hb_012678_020 Hb_004046_030--Hb_012678_020 Hb_002897_090 Hb_002897_090 Hb_000359_210--Hb_002897_090 Hb_002027_080 Hb_002027_080 Hb_000359_210--Hb_002027_080 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_004679_030 Hb_004679_030 Hb_000359_210--Hb_004679_030 Hb_000645_280 Hb_000645_280 Hb_000684_210--Hb_000645_280 Hb_000684_210--Hb_000359_210 Hb_001662_100 Hb_001662_100 Hb_000684_210--Hb_001662_100 Hb_003106_190 Hb_003106_190 Hb_000684_210--Hb_003106_190 Hb_009569_040 Hb_009569_040 Hb_000684_210--Hb_009569_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.64038 5.71847 12.2075 22.4056 8.53529 10.2609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2542 9.62462 12.0119 14.5063 23.004

CAGE analysis