Hb_012733_040

Information

Type -
Description -
Location Contig12733: 68164-84929
Sequence    

Annotation

kegg
ID rcu:RCOM_0868210
description ATP-dependent clp protease ATP-binding subunit clpx, putative
nr
ID XP_002519956.1
description ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
swissprot
ID A6LT28
description ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=clpX PE=3 SV=1
trembl
ID B9S1U1
description ATP-dependent clp protease ATP-binding subunit clpx, putative OS=Ricinus communis GN=RCOM_0868210 PE=4 SV=1
Gene Ontology
ID GO:0005524
description atp-dependent clp protease atp-binding subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08350: 68781-96490 , PASA_asmbl_08351: 68781-81322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012733_040 0.0 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
2 Hb_001242_120 0.0632302975 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
3 Hb_001195_400 0.0651724123 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
4 Hb_002301_100 0.0666875472 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
5 Hb_000364_050 0.0715463611 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
6 Hb_004452_120 0.0722097908 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
7 Hb_003159_050 0.0735073807 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_001946_390 0.0746944239 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
9 Hb_006059_030 0.0775307712 - - glutamate dehydrogenase, putative [Ricinus communis]
10 Hb_000398_060 0.0788318711 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
11 Hb_005725_130 0.0792045966 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
12 Hb_001269_130 0.079217055 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
13 Hb_035273_020 0.080327309 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
14 Hb_000185_220 0.0811483328 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
15 Hb_006824_010 0.0819101777 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
16 Hb_003878_150 0.0822706988 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
17 Hb_012393_030 0.0824689109 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
18 Hb_015099_030 0.0830558825 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
19 Hb_000078_140 0.0843155848 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
20 Hb_000120_370 0.0845459519 - - type 2 diacylglycerol acyltransferase [Ricinus communis]

Gene co-expression network

sample Hb_012733_040 Hb_012733_040 Hb_001242_120 Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_000364_050 Hb_000364_050 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_005725_130 Hb_005725_130 Hb_001242_120--Hb_005725_130 Hb_002928_090 Hb_002928_090 Hb_001242_120--Hb_002928_090 Hb_001242_120--Hb_002301_100 Hb_001051_050 Hb_001051_050 Hb_001242_120--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_001242_120--Hb_003878_150 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_000185_220 Hb_000185_220 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110 Hb_000398_060 Hb_000398_060 Hb_002301_100--Hb_000398_060 Hb_001828_180 Hb_001828_180 Hb_002301_100--Hb_001828_180 Hb_000363_190 Hb_000363_190 Hb_002301_100--Hb_000363_190 Hb_001493_150 Hb_001493_150 Hb_002301_100--Hb_001493_150 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_000364_050--Hb_004452_120 Hb_001269_130 Hb_001269_130 Hb_000364_050--Hb_001269_130 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_004452_120--Hb_010863_050 Hb_133702_010 Hb_133702_010 Hb_004452_120--Hb_133702_010 Hb_000061_180 Hb_000061_180 Hb_004452_120--Hb_000061_180 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020 Hb_001269_600 Hb_001269_600 Hb_003159_050--Hb_001269_600 Hb_007933_040 Hb_007933_040 Hb_003159_050--Hb_007933_040 Hb_007741_120 Hb_007741_120 Hb_003159_050--Hb_007741_120 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07639 1.80108 4.48482 4.96094 1.70076 2.27554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05106 3.00671 2.13416 4.9536 5.75567

CAGE analysis