Hb_001269_600

Information

Type -
Description -
Location Contig1269: 622035-633994
Sequence    

Annotation

kegg
ID rcu:RCOM_1442140
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002512738.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q67UP9
description Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1
trembl
ID B9RGM9
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1442140 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 60

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08238: 622049-633955 , PASA_asmbl_08239: 622094-633955 , PASA_asmbl_08240: 629320-629652 , PASA_asmbl_08241: 630685-630830 , PASA_asmbl_08242: 625870-626046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_600 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_001703_050 0.0613659513 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
3 Hb_003159_050 0.0680474648 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000409_050 0.0700641332 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
5 Hb_001828_180 0.0736346653 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
6 Hb_004096_110 0.073905074 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
7 Hb_000363_190 0.0767565097 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
8 Hb_000078_140 0.0770643948 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
9 Hb_000663_060 0.0775376628 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
10 Hb_002686_200 0.0791833327 - - glucosidase II beta subunit, putative [Ricinus communis]
11 Hb_000365_400 0.0798955244 - - metal ion transporter, putative [Ricinus communis]
12 Hb_065500_020 0.080258344 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
13 Hb_028487_160 0.0807854114 - - clathrin assembly protein, putative [Ricinus communis]
14 Hb_159809_070 0.0809315597 - - phospholipase A-2-activating protein, putative [Ricinus communis]
15 Hb_002301_100 0.0823998902 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
16 Hb_003086_170 0.0831086902 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
17 Hb_001242_120 0.083292379 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
18 Hb_005489_040 0.0833471603 - - PREDICTED: cullin-1 [Jatropha curcas]
19 Hb_065968_010 0.0837104561 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
20 Hb_002968_080 0.0838356244 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_600 Hb_001269_600 Hb_001703_050 Hb_001703_050 Hb_001269_600--Hb_001703_050 Hb_003159_050 Hb_003159_050 Hb_001269_600--Hb_003159_050 Hb_000409_050 Hb_000409_050 Hb_001269_600--Hb_000409_050 Hb_001828_180 Hb_001828_180 Hb_001269_600--Hb_001828_180 Hb_004096_110 Hb_004096_110 Hb_001269_600--Hb_004096_110 Hb_000363_190 Hb_000363_190 Hb_001269_600--Hb_000363_190 Hb_003994_220 Hb_003994_220 Hb_001703_050--Hb_003994_220 Hb_065500_020 Hb_065500_020 Hb_001703_050--Hb_065500_020 Hb_011214_160 Hb_011214_160 Hb_001703_050--Hb_011214_160 Hb_000352_300 Hb_000352_300 Hb_001703_050--Hb_000352_300 Hb_000184_070 Hb_000184_070 Hb_001703_050--Hb_000184_070 Hb_007933_040 Hb_007933_040 Hb_003159_050--Hb_007933_040 Hb_012733_040 Hb_012733_040 Hb_003159_050--Hb_012733_040 Hb_007741_120 Hb_007741_120 Hb_003159_050--Hb_007741_120 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060 Hb_005489_040 Hb_005489_040 Hb_000409_050--Hb_005489_040 Hb_006189_020 Hb_006189_020 Hb_000409_050--Hb_006189_020 Hb_000773_040 Hb_000773_040 Hb_000409_050--Hb_000773_040 Hb_027506_010 Hb_027506_010 Hb_000409_050--Hb_027506_010 Hb_016172_030 Hb_016172_030 Hb_000409_050--Hb_016172_030 Hb_060980_010 Hb_060980_010 Hb_000409_050--Hb_060980_010 Hb_000663_060 Hb_000663_060 Hb_001828_180--Hb_000663_060 Hb_001828_180--Hb_000363_190 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_002301_100 Hb_002301_100 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010 Hb_021576_010 Hb_021576_010 Hb_004096_110--Hb_021576_010 Hb_003777_290 Hb_003777_290 Hb_004096_110--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_004096_110--Hb_000327_250 Hb_000979_220 Hb_000979_220 Hb_004096_110--Hb_000979_220 Hb_011883_020 Hb_011883_020 Hb_004096_110--Hb_011883_020 Hb_000363_190--Hb_000663_060 Hb_000363_190--Hb_000409_050 Hb_000398_060 Hb_000398_060 Hb_000363_190--Hb_000398_060 Hb_002232_360 Hb_002232_360 Hb_000363_190--Hb_002232_360 Hb_000363_190--Hb_002301_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.26406 10.7311 17.7637 24.2568 13.2771 10.5334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.85615 13.0775 13.3401 24.9714 23.2488

CAGE analysis