Hb_001703_050

Information

Type -
Description -
Location Contig1703: 124646-131437
Sequence    

Annotation

kegg
ID rcu:RCOM_0837780
description Transmembrane emp24 domain-containing protein 10 precursor, putative
nr
ID XP_002522481.1
description Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
swissprot
ID Q9LQY3
description Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1
trembl
ID B9S912
description Transmembrane emp24 domain-containing protein 10, putative OS=Ricinus communis GN=RCOM_0837780 PE=3 SV=1
Gene Ontology
ID GO:0016021
description transmembrane emp24 domain-containing protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15929: 124693-131393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001703_050 0.0 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
2 Hb_001269_600 0.0613659513 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_003994_220 0.0640536441 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
4 Hb_065500_020 0.0686234096 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
5 Hb_011214_160 0.0699721213 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
6 Hb_000352_300 0.0704692083 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
7 Hb_000184_070 0.0727334491 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
8 Hb_159809_070 0.073673338 - - phospholipase A-2-activating protein, putative [Ricinus communis]
9 Hb_003097_140 0.0751258684 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
10 Hb_003038_040 0.0766473967 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
11 Hb_030982_010 0.0768313286 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000046_500 0.0795495964 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
13 Hb_000161_210 0.0797413154 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
14 Hb_002686_200 0.0805011538 - - glucosidase II beta subunit, putative [Ricinus communis]
15 Hb_000101_080 0.0815074604 - - PREDICTED: protein CREG1 [Jatropha curcas]
16 Hb_003998_040 0.0815091411 - - organic anion transporter, putative [Ricinus communis]
17 Hb_065968_010 0.0821793096 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
18 Hb_008289_040 0.0842603084 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
19 Hb_003777_200 0.0846437025 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
20 Hb_000078_140 0.0849658936 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]

Gene co-expression network

sample Hb_001703_050 Hb_001703_050 Hb_001269_600 Hb_001269_600 Hb_001703_050--Hb_001269_600 Hb_003994_220 Hb_003994_220 Hb_001703_050--Hb_003994_220 Hb_065500_020 Hb_065500_020 Hb_001703_050--Hb_065500_020 Hb_011214_160 Hb_011214_160 Hb_001703_050--Hb_011214_160 Hb_000352_300 Hb_000352_300 Hb_001703_050--Hb_000352_300 Hb_000184_070 Hb_000184_070 Hb_001703_050--Hb_000184_070 Hb_003159_050 Hb_003159_050 Hb_001269_600--Hb_003159_050 Hb_000409_050 Hb_000409_050 Hb_001269_600--Hb_000409_050 Hb_001828_180 Hb_001828_180 Hb_001269_600--Hb_001828_180 Hb_004096_110 Hb_004096_110 Hb_001269_600--Hb_004096_110 Hb_000363_190 Hb_000363_190 Hb_001269_600--Hb_000363_190 Hb_003038_040 Hb_003038_040 Hb_003994_220--Hb_003038_040 Hb_031527_080 Hb_031527_080 Hb_003994_220--Hb_031527_080 Hb_003097_140 Hb_003097_140 Hb_003994_220--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_003994_220--Hb_007416_210 Hb_001021_010 Hb_001021_010 Hb_003994_220--Hb_001021_010 Hb_060980_010 Hb_060980_010 Hb_065500_020--Hb_060980_010 Hb_002749_060 Hb_002749_060 Hb_065500_020--Hb_002749_060 Hb_016172_030 Hb_016172_030 Hb_065500_020--Hb_016172_030 Hb_011819_020 Hb_011819_020 Hb_065500_020--Hb_011819_020 Hb_021165_010 Hb_021165_010 Hb_065500_020--Hb_021165_010 Hb_008289_040 Hb_008289_040 Hb_065500_020--Hb_008289_040 Hb_003998_040 Hb_003998_040 Hb_011214_160--Hb_003998_040 Hb_000371_090 Hb_000371_090 Hb_011214_160--Hb_000371_090 Hb_001051_070 Hb_001051_070 Hb_011214_160--Hb_001051_070 Hb_000197_020 Hb_000197_020 Hb_011214_160--Hb_000197_020 Hb_000139_530 Hb_000139_530 Hb_011214_160--Hb_000139_530 Hb_007481_010 Hb_007481_010 Hb_000352_300--Hb_007481_010 Hb_003528_030 Hb_003528_030 Hb_000352_300--Hb_003528_030 Hb_000352_300--Hb_000184_070 Hb_000477_100 Hb_000477_100 Hb_000352_300--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_000352_300--Hb_000046_500 Hb_003683_020 Hb_003683_020 Hb_000352_300--Hb_003683_020 Hb_001789_030 Hb_001789_030 Hb_000184_070--Hb_001789_030 Hb_000163_090 Hb_000163_090 Hb_000184_070--Hb_000163_090 Hb_000184_070--Hb_000371_090 Hb_002675_030 Hb_002675_030 Hb_000184_070--Hb_002675_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9338 13.9173 24.9878 38.3288 19.2513 15.4869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5942 11.7852 17.6762 30.5353 26.4945

CAGE analysis