Hb_007416_210

Information

Type -
Description -
Location Contig7416: 128498-134165
Sequence    

Annotation

kegg
ID tcc:TCM_036827
description Coatomer, beta subunit isoform 1
nr
ID XP_012076347.1
description PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
swissprot
ID Q9SV21
description Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=2 SV=2
trembl
ID A0A067KEM0
description Coatomer subunit beta OS=Jatropha curcas GN=JCGZ_07024 PE=4 SV=1
Gene Ontology
ID GO:0030126
description coatomer subunit beta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56438: 128513-134128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_210 0.0 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
2 Hb_000390_050 0.0726937277 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
3 Hb_003097_140 0.0753652218 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
4 Hb_003994_220 0.0779769247 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
5 Hb_043792_040 0.0801743458 - - hypothetical protein, partial [Rosa rugosa]
6 Hb_007765_040 0.0850251123 - - Cytosolic enolase isoform 3 [Theobroma cacao]
7 Hb_003340_010 0.0888326739 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
8 Hb_000853_200 0.0892333755 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
9 Hb_003206_110 0.091151042 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
10 Hb_011377_040 0.0921698398 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
11 Hb_027445_020 0.0922957288 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
12 Hb_074197_040 0.0925719183 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
13 Hb_003777_200 0.0925922615 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
14 Hb_001703_050 0.0937786796 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
15 Hb_138585_080 0.0938242519 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
16 Hb_000976_100 0.0943962242 - - eukaryotic translation elongation factor, putative [Ricinus communis]
17 Hb_005650_010 0.0947233111 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002874_110 0.0961747118 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
19 Hb_000260_510 0.0971933335 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
20 Hb_001507_120 0.0972008248 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007416_210 Hb_007416_210 Hb_000390_050 Hb_000390_050 Hb_007416_210--Hb_000390_050 Hb_003097_140 Hb_003097_140 Hb_007416_210--Hb_003097_140 Hb_003994_220 Hb_003994_220 Hb_007416_210--Hb_003994_220 Hb_043792_040 Hb_043792_040 Hb_007416_210--Hb_043792_040 Hb_007765_040 Hb_007765_040 Hb_007416_210--Hb_007765_040 Hb_003340_010 Hb_003340_010 Hb_007416_210--Hb_003340_010 Hb_000390_050--Hb_007765_040 Hb_000417_390 Hb_000417_390 Hb_000390_050--Hb_000417_390 Hb_000390_050--Hb_003097_140 Hb_002928_090 Hb_002928_090 Hb_000390_050--Hb_002928_090 Hb_002902_130 Hb_002902_130 Hb_000390_050--Hb_002902_130 Hb_003097_140--Hb_003994_220 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_003097_140--Hb_007765_040 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_027445_020 Hb_027445_020 Hb_003097_140--Hb_027445_020 Hb_003038_040 Hb_003038_040 Hb_003994_220--Hb_003038_040 Hb_001703_050 Hb_001703_050 Hb_003994_220--Hb_001703_050 Hb_031527_080 Hb_031527_080 Hb_003994_220--Hb_031527_080 Hb_001021_010 Hb_001021_010 Hb_003994_220--Hb_001021_010 Hb_000062_540 Hb_000062_540 Hb_043792_040--Hb_000062_540 Hb_001936_130 Hb_001936_130 Hb_043792_040--Hb_001936_130 Hb_000409_030 Hb_000409_030 Hb_043792_040--Hb_000409_030 Hb_002289_060 Hb_002289_060 Hb_043792_040--Hb_002289_060 Hb_019181_040 Hb_019181_040 Hb_043792_040--Hb_019181_040 Hb_003998_040 Hb_003998_040 Hb_007765_040--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_007765_040--Hb_005218_020 Hb_000066_030 Hb_000066_030 Hb_007765_040--Hb_000066_030 Hb_000890_070 Hb_000890_070 Hb_003340_010--Hb_000890_070 Hb_002874_110 Hb_002874_110 Hb_003340_010--Hb_002874_110 Hb_003517_070 Hb_003517_070 Hb_003340_010--Hb_003517_070 Hb_011537_060 Hb_011537_060 Hb_003340_010--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_003340_010--Hb_007933_040 Hb_000649_060 Hb_000649_060 Hb_003340_010--Hb_000649_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9452 18.0347 22.8104 52.3631 16.7268 17.7366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7241 11.565 30.5192 31.3755 42.3137

CAGE analysis