Hb_003340_010

Information

Type -
Description -
Location Contig3340: 7539-17357
Sequence    

Annotation

kegg
ID rcu:RCOM_1093200
description ubiquitin-activating enzyme E1, putative
nr
ID XP_002275617.3
description PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
swissprot
ID P93028
description Ubiquitin-activating enzyme E1 1 OS=Arabidopsis thaliana GN=UBA1 PE=1 SV=1
trembl
ID V4UGB0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027704mg PE=3 SV=1
Gene Ontology
ID GO:0005524
description ubiquitin-activating enzyme e1 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35056: 7537-15778 , PASA_asmbl_35057: 7537-15778 , PASA_asmbl_35058: 15398-15778 , PASA_asmbl_35060: 13308-13606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003340_010 0.0 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
2 Hb_000890_070 0.0665644263 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
3 Hb_002874_110 0.0721462285 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
4 Hb_003517_070 0.0730150015 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
5 Hb_011537_060 0.0773424091 - - UPF0061 protein azo1574 [Morus notabilis]
6 Hb_007933_040 0.0792728198 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
7 Hb_000649_060 0.0796920771 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
8 Hb_002749_060 0.0806669424 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
9 Hb_001975_150 0.0810864426 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
10 Hb_027445_020 0.0811519593 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
11 Hb_001511_180 0.0814653596 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
12 Hb_000976_100 0.0859324869 - - eukaryotic translation elongation factor, putative [Ricinus communis]
13 Hb_007416_210 0.0888326739 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
14 Hb_001586_030 0.0898098564 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
15 Hb_001587_030 0.0898819795 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
16 Hb_002025_030 0.091629971 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_000363_040 0.0919103171 - - Protein transport protein Sec24A, putative [Ricinus communis]
18 Hb_001377_350 0.0920011865 - - PREDICTED: exportin-2 [Jatropha curcas]
19 Hb_126976_010 0.0920430633 - - -
20 Hb_021297_020 0.092050725 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]

Gene co-expression network

sample Hb_003340_010 Hb_003340_010 Hb_000890_070 Hb_000890_070 Hb_003340_010--Hb_000890_070 Hb_002874_110 Hb_002874_110 Hb_003340_010--Hb_002874_110 Hb_003517_070 Hb_003517_070 Hb_003340_010--Hb_003517_070 Hb_011537_060 Hb_011537_060 Hb_003340_010--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_003340_010--Hb_007933_040 Hb_000649_060 Hb_000649_060 Hb_003340_010--Hb_000649_060 Hb_002749_060 Hb_002749_060 Hb_000890_070--Hb_002749_060 Hb_004450_070 Hb_004450_070 Hb_000890_070--Hb_004450_070 Hb_004048_120 Hb_004048_120 Hb_000890_070--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000890_070--Hb_003280_020 Hb_000890_070--Hb_002874_110 Hb_002874_110--Hb_002749_060 Hb_000803_320 Hb_000803_320 Hb_002874_110--Hb_000803_320 Hb_073171_070 Hb_073171_070 Hb_002874_110--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_002874_110--Hb_006663_060 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_009288_020 Hb_009288_020 Hb_002874_110--Hb_009288_020 Hb_004917_010 Hb_004917_010 Hb_003517_070--Hb_004917_010 Hb_001975_150 Hb_001975_150 Hb_003517_070--Hb_001975_150 Hb_000392_160 Hb_000392_160 Hb_003517_070--Hb_000392_160 Hb_003517_070--Hb_000803_320 Hb_001080_300 Hb_001080_300 Hb_003517_070--Hb_001080_300 Hb_011537_060--Hb_001975_150 Hb_011537_060--Hb_007933_040 Hb_004218_180 Hb_004218_180 Hb_011537_060--Hb_004218_180 Hb_005489_040 Hb_005489_040 Hb_011537_060--Hb_005489_040 Hb_011537_060--Hb_002874_110 Hb_003159_050 Hb_003159_050 Hb_007933_040--Hb_003159_050 Hb_007741_120 Hb_007741_120 Hb_007933_040--Hb_007741_120 Hb_106890_010 Hb_106890_010 Hb_007933_040--Hb_106890_010 Hb_002686_200 Hb_002686_200 Hb_007933_040--Hb_002686_200 Hb_001587_030 Hb_001587_030 Hb_000649_060--Hb_001587_030 Hb_001226_130 Hb_001226_130 Hb_000649_060--Hb_001226_130 Hb_020805_180 Hb_020805_180 Hb_000649_060--Hb_020805_180 Hb_000649_060--Hb_000890_070 Hb_000649_060--Hb_004450_070 Hb_000152_700 Hb_000152_700 Hb_000649_060--Hb_000152_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8361 25.7094 23.1295 44.6433 13.4976 20.6938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2887 13.261 23.3264 43.1221 51.2581

CAGE analysis