Hb_004917_010

Information

Type -
Description -
Location Contig4917: 3779-8886
Sequence    

Annotation

kegg
ID rcu:RCOM_0367530
description Spotted leaf protein, putative
nr
ID XP_012065019.1
description PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
swissprot
ID Q9SNC6
description U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1
trembl
ID A0A067LAL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05690 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45321: 3966-7049 , PASA_asmbl_45322: 6528-6969 , PASA_asmbl_45323: 7050-7332 , PASA_asmbl_45324: 7333-8883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004917_010 0.0 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
2 Hb_003517_070 0.0750898672 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
3 Hb_000484_010 0.0825226509 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
4 Hb_003340_010 0.0999459499 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
5 Hb_002025_030 0.104051578 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_023344_160 0.106950682 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
7 Hb_000392_160 0.1107037889 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
8 Hb_000183_030 0.1113790846 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
9 Hb_001511_180 0.1138500567 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
10 Hb_002400_060 0.1147649638 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
11 Hb_000941_150 0.1175907354 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
12 Hb_001210_040 0.1178434272 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
13 Hb_002311_130 0.1182225223 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
14 Hb_000125_180 0.1183941721 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
15 Hb_002817_060 0.1184522676 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
16 Hb_002611_010 0.1186365817 - - amino acid transporter, putative [Ricinus communis]
17 Hb_005181_050 0.1197916904 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
18 Hb_009296_080 0.1211024063 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
19 Hb_000167_120 0.1225713224 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
20 Hb_001691_200 0.1225930128 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]

Gene co-expression network

sample Hb_004917_010 Hb_004917_010 Hb_003517_070 Hb_003517_070 Hb_004917_010--Hb_003517_070 Hb_000484_010 Hb_000484_010 Hb_004917_010--Hb_000484_010 Hb_003340_010 Hb_003340_010 Hb_004917_010--Hb_003340_010 Hb_002025_030 Hb_002025_030 Hb_004917_010--Hb_002025_030 Hb_023344_160 Hb_023344_160 Hb_004917_010--Hb_023344_160 Hb_000392_160 Hb_000392_160 Hb_004917_010--Hb_000392_160 Hb_003517_070--Hb_003340_010 Hb_001975_150 Hb_001975_150 Hb_003517_070--Hb_001975_150 Hb_003517_070--Hb_000392_160 Hb_000803_320 Hb_000803_320 Hb_003517_070--Hb_000803_320 Hb_001080_300 Hb_001080_300 Hb_003517_070--Hb_001080_300 Hb_000484_010--Hb_002025_030 Hb_000183_030 Hb_000183_030 Hb_000484_010--Hb_000183_030 Hb_002609_080 Hb_002609_080 Hb_000484_010--Hb_002609_080 Hb_000484_010--Hb_000392_160 Hb_001377_100 Hb_001377_100 Hb_000484_010--Hb_001377_100 Hb_000890_070 Hb_000890_070 Hb_003340_010--Hb_000890_070 Hb_002874_110 Hb_002874_110 Hb_003340_010--Hb_002874_110 Hb_011537_060 Hb_011537_060 Hb_003340_010--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_003340_010--Hb_007933_040 Hb_000649_060 Hb_000649_060 Hb_003340_010--Hb_000649_060 Hb_002025_030--Hb_000392_160 Hb_002025_030--Hb_000803_320 Hb_002025_030--Hb_003340_010 Hb_002025_030--Hb_003517_070 Hb_002025_030--Hb_000183_030 Hb_005977_070 Hb_005977_070 Hb_023344_160--Hb_005977_070 Hb_002631_210 Hb_002631_210 Hb_023344_160--Hb_002631_210 Hb_004204_010 Hb_004204_010 Hb_023344_160--Hb_004204_010 Hb_001723_100 Hb_001723_100 Hb_023344_160--Hb_001723_100 Hb_001691_200 Hb_001691_200 Hb_023344_160--Hb_001691_200 Hb_171554_040 Hb_171554_040 Hb_023344_160--Hb_171554_040 Hb_000392_160--Hb_000183_030 Hb_000392_160--Hb_001975_150 Hb_000392_160--Hb_000803_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82609 7.20515 4.06909 9.89046 2.42965 3.16123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.48678 2.38958 7.68832 8.50608 12.7799

CAGE analysis