Hb_002609_080

Information

Type -
Description -
Location Contig2609: 67512-74612
Sequence    

Annotation

kegg
ID rcu:RCOM_0611470
description Cell division protein ftsH, putative (EC:3.6.4.3)
nr
ID XP_012067987.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9FIM2
description ATP-dependent zinc metalloprotease FTSH 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1
trembl
ID A0A067LGP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08500 PE=3 SV=1
Gene Ontology
ID GO:0016021
description atp-dependent zinc metalloprotease ftsh chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27181: 67641-74154 , PASA_asmbl_27182: 67641-71766 , PASA_asmbl_27183: 67641-74560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_080 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
2 Hb_004306_120 0.0530583403 - - DNA binding protein, putative [Ricinus communis]
3 Hb_011021_050 0.0645964104 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
4 Hb_001691_200 0.0758622205 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
5 Hb_001377_100 0.0793750086 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
6 Hb_003849_280 0.0811894156 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
7 Hb_005181_050 0.081251228 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
8 Hb_000009_410 0.0822263518 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
9 Hb_000059_240 0.08318385 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
10 Hb_011485_060 0.0841599574 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
11 Hb_005408_030 0.0842262408 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
12 Hb_000363_300 0.0846306167 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
13 Hb_000484_010 0.0853024531 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
14 Hb_171554_040 0.0862525538 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
15 Hb_005186_040 0.0872559405 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
16 Hb_005977_070 0.0876416124 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
17 Hb_007441_160 0.0878675758 - - RNA binding protein, putative [Ricinus communis]
18 Hb_002631_210 0.0887808594 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
19 Hb_012244_020 0.0899918444 - - calpain, putative [Ricinus communis]
20 Hb_000811_060 0.0907807362 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]

Gene co-expression network

sample Hb_002609_080 Hb_002609_080 Hb_004306_120 Hb_004306_120 Hb_002609_080--Hb_004306_120 Hb_011021_050 Hb_011021_050 Hb_002609_080--Hb_011021_050 Hb_001691_200 Hb_001691_200 Hb_002609_080--Hb_001691_200 Hb_001377_100 Hb_001377_100 Hb_002609_080--Hb_001377_100 Hb_003849_280 Hb_003849_280 Hb_002609_080--Hb_003849_280 Hb_005181_050 Hb_005181_050 Hb_002609_080--Hb_005181_050 Hb_004306_120--Hb_011021_050 Hb_004306_120--Hb_003849_280 Hb_000363_300 Hb_000363_300 Hb_004306_120--Hb_000363_300 Hb_005408_030 Hb_005408_030 Hb_004306_120--Hb_005408_030 Hb_001648_020 Hb_001648_020 Hb_004306_120--Hb_001648_020 Hb_011021_050--Hb_005408_030 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_005186_040 Hb_005186_040 Hb_011021_050--Hb_005186_040 Hb_002631_210 Hb_002631_210 Hb_001691_200--Hb_002631_210 Hb_004208_050 Hb_004208_050 Hb_001691_200--Hb_004208_050 Hb_011883_020 Hb_011883_020 Hb_001691_200--Hb_011883_020 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230 Hb_011174_020 Hb_011174_020 Hb_003849_280--Hb_011174_020 Hb_033312_130 Hb_033312_130 Hb_003849_280--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_003849_280--Hb_001008_130 Hb_000844_050 Hb_000844_050 Hb_003849_280--Hb_000844_050 Hb_013459_020 Hb_013459_020 Hb_003849_280--Hb_013459_020 Hb_003124_270 Hb_003124_270 Hb_005181_050--Hb_003124_270 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_003680_020 Hb_003680_020 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_005181_050--Hb_000844_050 Hb_000809_250 Hb_000809_250 Hb_005181_050--Hb_000809_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59036 17.3687 7.85912 10.9895 6.49986 6.27726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.9248 5.82482 8.68827 15.3414 22.6133

CAGE analysis