Hb_000656_060

Information

Type -
Description -
Location Contig656: 35873-43873
Sequence    

Annotation

kegg
ID rcu:RCOM_0684820
description DNA binding protein, putative
nr
ID XP_002529195.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9ST76
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0684820 PE=4 SV=1
Gene Ontology
ID GO:0000124
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52702: 37207-37363 , PASA_asmbl_52703: 37364-38554 , PASA_asmbl_52705: 39912-43128 , PASA_asmbl_52706: 42558-42927 , PASA_asmbl_52708: 43610-43710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_060 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_005186_040 0.0686835451 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
3 Hb_011021_050 0.0713253238 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
4 Hb_001726_050 0.074417581 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
5 Hb_000261_150 0.0763158489 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001726_100 0.0763850902 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
7 Hb_000856_070 0.0780765616 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
8 Hb_005348_010 0.0794084065 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012244_020 0.0843002072 - - calpain, putative [Ricinus communis]
10 Hb_004705_020 0.0858644778 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
11 Hb_007441_160 0.086909176 - - RNA binding protein, putative [Ricinus communis]
12 Hb_000009_410 0.0883498496 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
13 Hb_000672_040 0.0898591129 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
14 Hb_005488_170 0.0924245044 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
15 Hb_002521_020 0.0925168101 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
16 Hb_000925_090 0.0928394113 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
17 Hb_002609_080 0.0934843082 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
18 Hb_000329_750 0.0943707706 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
19 Hb_002909_120 0.0948865348 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
20 Hb_005408_030 0.0954554382 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]

Gene co-expression network

sample Hb_000656_060 Hb_000656_060 Hb_005186_040 Hb_005186_040 Hb_000656_060--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_000656_060--Hb_011021_050 Hb_001726_050 Hb_001726_050 Hb_000656_060--Hb_001726_050 Hb_000261_150 Hb_000261_150 Hb_000656_060--Hb_000261_150 Hb_001726_100 Hb_001726_100 Hb_000656_060--Hb_001726_100 Hb_000856_070 Hb_000856_070 Hb_000656_060--Hb_000856_070 Hb_012244_020 Hb_012244_020 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_004306_120 Hb_004306_120 Hb_011021_050--Hb_004306_120 Hb_005408_030 Hb_005408_030 Hb_011021_050--Hb_005408_030 Hb_002609_080 Hb_002609_080 Hb_011021_050--Hb_002609_080 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_011021_050--Hb_005186_040 Hb_001726_050--Hb_001726_100 Hb_005488_170 Hb_005488_170 Hb_001726_050--Hb_005488_170 Hb_099270_030 Hb_099270_030 Hb_001726_050--Hb_099270_030 Hb_001726_050--Hb_005186_040 Hb_002909_120 Hb_002909_120 Hb_001726_050--Hb_002909_120 Hb_001699_280 Hb_001699_280 Hb_000261_150--Hb_001699_280 Hb_188063_010 Hb_188063_010 Hb_000261_150--Hb_188063_010 Hb_000083_070 Hb_000083_070 Hb_000261_150--Hb_000083_070 Hb_000261_150--Hb_005186_040 Hb_000025_710 Hb_000025_710 Hb_000261_150--Hb_000025_710 Hb_002095_070 Hb_002095_070 Hb_000261_150--Hb_002095_070 Hb_007120_060 Hb_007120_060 Hb_001726_100--Hb_007120_060 Hb_000925_090 Hb_000925_090 Hb_001726_100--Hb_000925_090 Hb_000363_300 Hb_000363_300 Hb_001726_100--Hb_000363_300 Hb_001726_100--Hb_012244_020 Hb_000856_070--Hb_012244_020 Hb_000856_070--Hb_011021_050 Hb_000856_070--Hb_000925_090 Hb_097185_010 Hb_097185_010 Hb_000856_070--Hb_097185_010 Hb_000856_070--Hb_005408_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.33532 17.0386 4.92416 5.00963 6.50575 6.87546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.43443 4.73446 7.59012 12.1848 18.1723

CAGE analysis