Hb_000261_150

Information

Type -
Description -
Location Contig261: 108209-127852
Sequence    

Annotation

kegg
ID rcu:RCOM_1018430
description hypothetical protein
nr
ID XP_002518058.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RWD9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1018430 PE=4 SV=1
Gene Ontology
ID GO:0007275
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27247: 108206-111732 , PASA_asmbl_27248: 112227-114382 , PASA_asmbl_27249: 114437-117949 , PASA_asmbl_27251: 119454-119619 , PASA_asmbl_27253: 124500-124601 , PASA_asmbl_27254: 125200-127537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001699_280 0.0618531515 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
3 Hb_188063_010 0.062409523 - - hypothetical protein RCOM_1469330 [Ricinus communis]
4 Hb_000083_070 0.0644507258 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
5 Hb_005186_040 0.0644825849 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
6 Hb_000025_710 0.0699757882 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
7 Hb_002095_070 0.0726735433 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
8 Hb_002333_050 0.0730079534 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
9 Hb_001133_030 0.0730170405 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
10 Hb_001951_170 0.074427558 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
11 Hb_002909_120 0.0747603717 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
12 Hb_012244_020 0.0753814282 - - calpain, putative [Ricinus communis]
13 Hb_008053_040 0.0755663144 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
14 Hb_009486_170 0.0762372764 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
15 Hb_000656_060 0.0763158489 - - DNA binding protein, putative [Ricinus communis]
16 Hb_001085_030 0.0775950218 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
17 Hb_024185_010 0.0794880738 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
18 Hb_000665_230 0.0827673009 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
19 Hb_000925_090 0.0830764724 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
20 Hb_000069_470 0.085788455 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000261_150 Hb_000261_150 Hb_001699_280 Hb_001699_280 Hb_000261_150--Hb_001699_280 Hb_188063_010 Hb_188063_010 Hb_000261_150--Hb_188063_010 Hb_000083_070 Hb_000083_070 Hb_000261_150--Hb_000083_070 Hb_005186_040 Hb_005186_040 Hb_000261_150--Hb_005186_040 Hb_000025_710 Hb_000025_710 Hb_000261_150--Hb_000025_710 Hb_002095_070 Hb_002095_070 Hb_000261_150--Hb_002095_070 Hb_000105_040 Hb_000105_040 Hb_001699_280--Hb_000105_040 Hb_001699_280--Hb_188063_010 Hb_003581_170 Hb_003581_170 Hb_001699_280--Hb_003581_170 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_002333_050 Hb_002333_050 Hb_188063_010--Hb_002333_050 Hb_188063_010--Hb_000025_710 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_188063_010--Hb_003581_170 Hb_001133_030 Hb_001133_030 Hb_000083_070--Hb_001133_030 Hb_000925_090 Hb_000925_090 Hb_000083_070--Hb_000925_090 Hb_003805_050 Hb_003805_050 Hb_000083_070--Hb_003805_050 Hb_000083_070--Hb_000025_710 Hb_012244_020 Hb_012244_020 Hb_000083_070--Hb_012244_020 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_003211_040 Hb_003211_040 Hb_002095_070--Hb_003211_040 Hb_002095_070--Hb_000083_070 Hb_000836_020 Hb_000836_020 Hb_002095_070--Hb_000836_020 Hb_002095_070--Hb_003805_050 Hb_001085_030 Hb_001085_030 Hb_002095_070--Hb_001085_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30701 9.04121 2.42815 2.75861 3.97084 4.59299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14889 2.80779 2.8668 5.74419 7.07326

CAGE analysis