Hb_000925_090

Information

Type -
Description -
Location Contig925: 63073-85015
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06970g
description POPTRDRAFT_777326; hypothetical protein
nr
ID XP_012074307.1
description PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IIK5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06970g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62587: 63267-64505 , PASA_asmbl_62588: 64668-83666 , PASA_asmbl_62589: 83943-89612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000925_090 0.0 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
2 Hb_001133_030 0.0385031694 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
3 Hb_012244_020 0.0518010489 - - calpain, putative [Ricinus communis]
4 Hb_002600_060 0.0549595632 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
5 Hb_000083_070 0.0608588003 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
6 Hb_009486_170 0.0685842474 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
7 Hb_001726_100 0.0694748473 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
8 Hb_001377_100 0.0702738306 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
9 Hb_000363_300 0.0707816127 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
10 Hb_006031_010 0.0720084712 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
11 Hb_007120_060 0.0720552576 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
12 Hb_000196_060 0.072326729 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
13 Hb_007545_130 0.0727864195 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
14 Hb_005186_040 0.0737626392 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
15 Hb_003506_050 0.0751977899 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_011174_020 0.0755921327 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
17 Hb_009486_090 0.0760972125 - - RNA binding protein, putative [Ricinus communis]
18 Hb_003124_100 0.0761888725 - - -
19 Hb_000608_300 0.0768319934 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
20 Hb_000958_050 0.077715595 - - hypothetical protein JCGZ_16781 [Jatropha curcas]

Gene co-expression network

sample Hb_000925_090 Hb_000925_090 Hb_001133_030 Hb_001133_030 Hb_000925_090--Hb_001133_030 Hb_012244_020 Hb_012244_020 Hb_000925_090--Hb_012244_020 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_001133_030--Hb_009486_170 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_005186_040 Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210 Hb_000331_560 Hb_000331_560 Hb_002600_060--Hb_000331_560 Hb_005211_020 Hb_005211_020 Hb_002600_060--Hb_005211_020 Hb_002600_060--Hb_001133_030 Hb_005488_170 Hb_005488_170 Hb_002600_060--Hb_005488_170 Hb_002600_060--Hb_000083_070 Hb_000083_070--Hb_001133_030 Hb_003805_050 Hb_003805_050 Hb_000083_070--Hb_003805_050 Hb_000261_150 Hb_000261_150 Hb_000083_070--Hb_000261_150 Hb_000025_710 Hb_000025_710 Hb_000083_070--Hb_000025_710 Hb_000083_070--Hb_012244_020 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_007120_060 Hb_007120_060 Hb_001726_100--Hb_007120_060 Hb_001726_050 Hb_001726_050 Hb_001726_100--Hb_001726_050 Hb_001726_100--Hb_000363_300 Hb_000656_060 Hb_000656_060 Hb_001726_100--Hb_000656_060 Hb_001726_100--Hb_012244_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93627 11.677 5.42643 5.541 6.52723 7.86325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.19893 3.40453 4.19784 8.93759 15.3534

CAGE analysis