Hb_012244_020

Information

Type -
Description -
Location Contig12244: 36113-60102
Sequence    

Annotation

kegg
ID rcu:RCOM_0343760
description calpain, putative (EC:3.4.22.52)
nr
ID XP_002523419.1
description calpain, putative [Ricinus communis]
swissprot
ID Q8RVL2
description Calpain-type cysteine protease DEK1 OS=Arabidopsis thaliana GN=DEK1 PE=1 SV=1
trembl
ID B9SBQ0
description Calpain, putative OS=Ricinus communis GN=RCOM_0343760 PE=4 SV=1
Gene Ontology
ID GO:0005622
description calpain-type cysteine protease dek1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06820: 36199-36349 , PASA_asmbl_06821: 42913-43965 , PASA_asmbl_06822: 43984-59909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012244_020 0.0 - - calpain, putative [Ricinus communis]
2 Hb_005186_040 0.0446586647 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
3 Hb_011174_020 0.0458003606 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
4 Hb_000363_300 0.0499603018 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
5 Hb_001648_020 0.0510962182 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
6 Hb_000925_090 0.0518010489 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
7 Hb_000934_210 0.0525087545 - - suppressor of ty, putative [Ricinus communis]
8 Hb_001133_030 0.0542870003 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
9 Hb_006031_010 0.0558481794 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
10 Hb_001377_100 0.0610528165 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
11 Hb_002007_110 0.0613828614 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
12 Hb_002805_210 0.0661183804 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
13 Hb_123531_010 0.0668823014 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
14 Hb_000083_070 0.0679095286 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
15 Hb_002521_020 0.0688509824 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
16 Hb_000958_050 0.0698703302 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
17 Hb_009486_170 0.0699927727 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
18 Hb_002600_060 0.0700983276 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
19 Hb_027472_220 0.0714202601 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
20 Hb_001925_060 0.0736562077 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_012244_020 Hb_012244_020 Hb_005186_040 Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_000363_300--Hb_011174_020 Hb_000363_300--Hb_001377_100 Hb_006031_010 Hb_006031_010 Hb_000363_300--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_000363_300--Hb_135572_010 Hb_012022_060 Hb_012022_060 Hb_000363_300--Hb_012022_060 Hb_005408_030 Hb_005408_030 Hb_001648_020--Hb_005408_030 Hb_001648_020--Hb_011174_020 Hb_001648_020--Hb_000934_210 Hb_001563_010 Hb_001563_010 Hb_001648_020--Hb_001563_010 Hb_001133_030 Hb_001133_030 Hb_000925_090--Hb_001133_030 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06102 7.73539 3.64905 4.04453 4.35471 4.62105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82126 2.71773 2.99996 5.94209 8.98428

CAGE analysis