Hb_000568_050

Information

Type -
Description -
Location Contig568: 76306-86935
Sequence    

Annotation

kegg
ID rcu:RCOM_0026260
description ATP binding protein, putative
nr
ID XP_012093256.1
description PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
swissprot
ID Q3UVK0
description Endoplasmic reticulum metallopeptidase 1 OS=Mus musculus GN=Ermp1 PE=2 SV=2
trembl
ID A0A067LID9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20045 PE=4 SV=1
Gene Ontology
ID GO:0005783
description endoplasmic reticulum metallopeptidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49193: 76323-76468 , PASA_asmbl_49194: 76525-78578 , PASA_asmbl_49195: 78899-87018 , PASA_asmbl_49196: 78899-87018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000568_050 0.0 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
2 Hb_011174_020 0.0563978432 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
3 Hb_012055_110 0.0667851602 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
4 Hb_006663_060 0.0675755118 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
5 Hb_000011_270 0.0676342982 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
6 Hb_000608_300 0.0691054539 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
7 Hb_000826_070 0.0705306288 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008387_020 0.0711596069 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
9 Hb_001221_180 0.0714676475 - - calcineurin-like phosphoesterase [Manihot esculenta]
10 Hb_002357_070 0.0729589396 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
11 Hb_004306_030 0.0747419178 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
12 Hb_000320_470 0.0760029149 - - calcium-dependent protein kinase [Hevea brasiliensis]
13 Hb_000196_060 0.0776926104 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
14 Hb_007635_040 0.077693772 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
15 Hb_000001_170 0.0783136149 - - amino acid transporter, putative [Ricinus communis]
16 Hb_000749_090 0.0787769273 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_003040_050 0.078828346 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
18 Hb_012244_020 0.0788754647 - - calpain, putative [Ricinus communis]
19 Hb_017469_110 0.0799272437 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
20 Hb_000363_300 0.0803541446 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000568_050 Hb_000568_050 Hb_011174_020 Hb_011174_020 Hb_000568_050--Hb_011174_020 Hb_012055_110 Hb_012055_110 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000011_270 Hb_000011_270 Hb_000568_050--Hb_000011_270 Hb_000608_300 Hb_000608_300 Hb_000568_050--Hb_000608_300 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_009288_020 Hb_009288_020 Hb_006663_060--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_006663_060--Hb_073171_070 Hb_006663_060--Hb_003040_050 Hb_006210_010 Hb_006210_010 Hb_006663_060--Hb_006210_010 Hb_002874_110 Hb_002874_110 Hb_006663_060--Hb_002874_110 Hb_003093_040 Hb_003093_040 Hb_000011_270--Hb_003093_040 Hb_001221_180 Hb_001221_180 Hb_000011_270--Hb_001221_180 Hb_000175_410 Hb_000175_410 Hb_000011_270--Hb_000175_410 Hb_000011_270--Hb_002357_070 Hb_000001_170 Hb_000001_170 Hb_000011_270--Hb_000001_170 Hb_004306_030 Hb_004306_030 Hb_000608_300--Hb_004306_030 Hb_001789_040 Hb_001789_040 Hb_000608_300--Hb_001789_040 Hb_002600_060 Hb_002600_060 Hb_000608_300--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_000608_300--Hb_005211_020 Hb_000608_300--Hb_012055_110 Hb_001999_140 Hb_001999_140 Hb_000826_070--Hb_001999_140 Hb_013459_020 Hb_013459_020 Hb_000826_070--Hb_013459_020 Hb_000664_120 Hb_000664_120 Hb_000826_070--Hb_000664_120 Hb_000826_070--Hb_005211_020 Hb_000826_070--Hb_012055_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.56468 8.64594 6.70517 7.80386 6.7288 6.53191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48777 3.97018 3.50769 10.4063 14.2336

CAGE analysis