Hb_000664_120

Information

Type -
Description -
Location Contig664: 309842-317070
Sequence    

Annotation

kegg
ID rcu:RCOM_0800560
description hypothetical protein
nr
ID XP_012077379.1
description PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
swissprot
ID Q9LFE0
description SART-1 family protein DOT2 OS=Arabidopsis thaliana GN=DOT2 PE=1 SV=1
trembl
ID A0A067KGP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07734 PE=4 SV=1
Gene Ontology
ID GO:0000398
description sart-1 family protein dot2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53145: 309803-316926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000664_120 0.0 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
2 Hb_005701_050 0.0531494693 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
3 Hb_000826_070 0.0625878706 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001999_140 0.0658595911 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000934_210 0.069028233 - - suppressor of ty, putative [Ricinus communis]
6 Hb_000035_100 0.0725626782 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_002461_020 0.0760460591 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
8 Hb_000958_050 0.0761054435 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
9 Hb_000030_140 0.0765832686 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
10 Hb_002357_070 0.078206435 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
11 Hb_001008_070 0.0803106694 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
12 Hb_013459_020 0.0805166809 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
13 Hb_000996_020 0.0810697188 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
14 Hb_000003_410 0.0836610302 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
15 Hb_006478_030 0.0840795113 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
16 Hb_012022_060 0.0841611497 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
17 Hb_012055_110 0.0848019636 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
18 Hb_000645_130 0.0862635525 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
19 Hb_000795_040 0.0875569398 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
20 Hb_160608_010 0.0875716164 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000664_120 Hb_000664_120 Hb_005701_050 Hb_005701_050 Hb_000664_120--Hb_005701_050 Hb_000826_070 Hb_000826_070 Hb_000664_120--Hb_000826_070 Hb_001999_140 Hb_001999_140 Hb_000664_120--Hb_001999_140 Hb_000934_210 Hb_000934_210 Hb_000664_120--Hb_000934_210 Hb_000035_100 Hb_000035_100 Hb_000664_120--Hb_000035_100 Hb_002461_020 Hb_002461_020 Hb_000664_120--Hb_002461_020 Hb_000958_050 Hb_000958_050 Hb_005701_050--Hb_000958_050 Hb_012055_110 Hb_012055_110 Hb_005701_050--Hb_012055_110 Hb_000996_020 Hb_000996_020 Hb_005701_050--Hb_000996_020 Hb_005701_050--Hb_000934_210 Hb_000206_160 Hb_000206_160 Hb_005701_050--Hb_000206_160 Hb_000826_070--Hb_001999_140 Hb_013459_020 Hb_013459_020 Hb_000826_070--Hb_013459_020 Hb_005211_020 Hb_005211_020 Hb_000826_070--Hb_005211_020 Hb_000568_050 Hb_000568_050 Hb_000826_070--Hb_000568_050 Hb_000826_070--Hb_012055_110 Hb_001999_140--Hb_013459_020 Hb_001221_180 Hb_001221_180 Hb_001999_140--Hb_001221_180 Hb_003093_040 Hb_003093_040 Hb_001999_140--Hb_003093_040 Hb_002357_070 Hb_002357_070 Hb_001999_140--Hb_002357_070 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_000934_210--Hb_002007_110 Hb_000934_210--Hb_002357_070 Hb_000934_210--Hb_000958_050 Hb_116349_130 Hb_116349_130 Hb_000035_100--Hb_116349_130 Hb_033312_130 Hb_033312_130 Hb_000035_100--Hb_033312_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_008165_020 Hb_008165_020 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210 Hb_005333_140 Hb_005333_140 Hb_002461_020--Hb_005333_140 Hb_002461_020--Hb_000996_020 Hb_002461_020--Hb_000030_140 Hb_000260_760 Hb_000260_760 Hb_002461_020--Hb_000260_760 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090 Hb_170077_010 Hb_170077_010 Hb_002461_020--Hb_170077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6402 37.2891 27.4384 18.865 19.9259 14.2848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.18123 11.7426 9.95319 29.0673 42.3503

CAGE analysis