Hb_001221_090

Information

Type -
Description -
Location Contig1221: 44461-57088
Sequence    

Annotation

kegg
ID rcu:RCOM_1506560
description ATP binding protein, putative (EC:3.6.4.3)
nr
ID XP_012079854.1
description PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
swissprot
ID P28737
description Protein MSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSP1 PE=1 SV=2
trembl
ID A0A067K480
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11308 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06703: 44473-57036 , PASA_asmbl_06704: 44473-52230 , PASA_asmbl_06705: 49615-49939
cDNA
(Sanger)
(ID:Location)		 024_B09.ab1: 44867-47389

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_090 0.0 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
2 Hb_003142_040 0.0550578667 - - Sf3a3 [Gossypium arboreum]
3 Hb_002092_070 0.0570834864 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
4 Hb_004429_010 0.0585040078 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_011202_030 0.061275009 - - arsenite-resistance protein, putative [Ricinus communis]
6 Hb_001904_030 0.0612886608 - - PREDICTED: importin-5 [Jatropha curcas]
7 Hb_002461_020 0.0620607937 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
8 Hb_007818_030 0.0637640636 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
9 Hb_002027_280 0.064739971 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
10 Hb_000189_630 0.0648386472 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_001673_050 0.0684104136 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
12 Hb_014720_020 0.0685770542 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
13 Hb_155159_010 0.0698034568 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
14 Hb_001171_030 0.0702516821 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
15 Hb_007283_030 0.0709190325 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
16 Hb_000334_130 0.0728656464 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
17 Hb_005832_010 0.073049534 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
18 Hb_000529_060 0.0732580942 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
19 Hb_009302_030 0.0733489148 - - hypothetical protein RCOM_1176340 [Ricinus communis]
20 Hb_044486_040 0.0734902469 - - PREDICTED: ion channel CASTOR-like [Malus domestica]

Gene co-expression network

sample Hb_001221_090 Hb_001221_090 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_002968_070 Hb_002968_070 Hb_003142_040--Hb_002968_070 Hb_001171_030 Hb_001171_030 Hb_003142_040--Hb_001171_030 Hb_001953_120 Hb_001953_120 Hb_003142_040--Hb_001953_120 Hb_000189_630 Hb_000189_630 Hb_003142_040--Hb_000189_630 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140 Hb_002045_250 Hb_002045_250 Hb_002092_070--Hb_002045_250 Hb_002092_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_002092_070--Hb_002284_170 Hb_009252_050 Hb_009252_050 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_004429_010--Hb_009252_050 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_004429_010--Hb_002284_170 Hb_007283_030 Hb_007283_030 Hb_011202_030--Hb_007283_030 Hb_011202_030--Hb_001904_030 Hb_044486_040 Hb_044486_040 Hb_011202_030--Hb_044486_040 Hb_155159_010 Hb_155159_010 Hb_011202_030--Hb_155159_010 Hb_009476_090 Hb_009476_090 Hb_011202_030--Hb_009476_090 Hb_005832_010 Hb_005832_010 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_001904_030--Hb_002027_280 Hb_005333_140 Hb_005333_140 Hb_002461_020--Hb_005333_140 Hb_000996_020 Hb_000996_020 Hb_002461_020--Hb_000996_020 Hb_000030_140 Hb_000030_140 Hb_002461_020--Hb_000030_140 Hb_000260_760 Hb_000260_760 Hb_002461_020--Hb_000260_760 Hb_170077_010 Hb_170077_010 Hb_002461_020--Hb_170077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3654 45.6741 28.5495 23.0154 24.6734 19.3588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.82176 8.48793 8.56578 25.9511 26.235

CAGE analysis