Hb_001904_030

Information

Type -
Description -
Location Contig1904: 68127-82438
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21100g
description POPTRDRAFT_555202; hypothetical protein
nr
ID XP_012067079.1
description PREDICTED: importin-5 [Jatropha curcas]
swissprot
ID Q8BKC5
description Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3
trembl
ID A0A067LDC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01877 PE=4 SV=1
Gene Ontology
ID GO:0005618
description importin-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18983: 68477-82420 , PASA_asmbl_18984: 76140-76334 , PASA_asmbl_18985: 78467-78747
cDNA
(Sanger)
(ID:Location)		 004_C17.ab1: 79552-82389

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001904_030 0.0 - - PREDICTED: importin-5 [Jatropha curcas]
2 Hb_005832_010 0.0440085047 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
3 Hb_000172_340 0.0486851956 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
4 Hb_000479_240 0.0538476638 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
5 Hb_003604_050 0.0555536546 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
6 Hb_002027_280 0.0607371901 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
7 Hb_001221_090 0.0612886608 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
8 Hb_002007_110 0.0619418979 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
9 Hb_003939_060 0.0620786213 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004429_010 0.0623855757 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_000934_210 0.0663938638 - - suppressor of ty, putative [Ricinus communis]
12 Hb_004223_160 0.0671369711 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
13 Hb_001951_170 0.0676771858 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
14 Hb_003216_090 0.0678928639 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
15 Hb_001341_160 0.067943161 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
16 Hb_000066_150 0.0682218965 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_001673_050 0.0699374351 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
18 Hb_000331_580 0.0702860193 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
19 Hb_011202_030 0.0708331637 - - arsenite-resistance protein, putative [Ricinus communis]
20 Hb_123531_010 0.0720824251 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001904_030 Hb_001904_030 Hb_005832_010 Hb_005832_010 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_004223_160 Hb_004223_160 Hb_005832_010--Hb_004223_160 Hb_009476_090 Hb_009476_090 Hb_005832_010--Hb_009476_090 Hb_002007_110 Hb_002007_110 Hb_005832_010--Hb_002007_110 Hb_001951_170 Hb_001951_170 Hb_005832_010--Hb_001951_170 Hb_005832_010--Hb_000172_340 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_123531_010 Hb_123531_010 Hb_000172_340--Hb_123531_010 Hb_007245_020 Hb_007245_020 Hb_000172_340--Hb_007245_020 Hb_000066_150 Hb_000066_150 Hb_000172_340--Hb_000066_150 Hb_005568_040 Hb_005568_040 Hb_000479_240--Hb_005568_040 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000008_240 Hb_000008_240 Hb_000479_240--Hb_000008_240 Hb_004645_070 Hb_004645_070 Hb_000479_240--Hb_004645_070 Hb_000479_240--Hb_003604_050 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_004429_010 Hb_004429_010 Hb_002027_280--Hb_004429_010 Hb_003124_160 Hb_003124_160 Hb_002027_280--Hb_003124_160 Hb_001673_050 Hb_001673_050 Hb_002027_280--Hb_001673_050 Hb_001277_300 Hb_001277_300 Hb_002027_280--Hb_001277_300 Hb_000352_070 Hb_000352_070 Hb_002027_280--Hb_000352_070 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.89978 16.8355 9.17648 9.47581 8.79701 8.71334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.75021 3.68094 4.28462 10.35 11.1613

CAGE analysis