Hb_003142_040

Information

Type -
Description -
Location Contig3142: 27517-34442
Sequence    

Annotation

kegg
ID pop:POPTR_0146s002002
description hypothetical protein
nr
ID KHG05920.1
description Sf3a3 [Gossypium arboreum]
swissprot
ID Q9D554
description Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=2 SV=2
trembl
ID A0A0B0MYU0
description Sf3a3 OS=Gossypium arboreum GN=F383_06735 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor 3a subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33204: 27571-32326
cDNA
(Sanger)
(ID:Location)		 032_P15.ab1: 31689-32322

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_040 0.0 - - Sf3a3 [Gossypium arboreum]
2 Hb_002968_070 0.0305574894 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
3 Hb_001171_030 0.0323759933 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
4 Hb_001953_120 0.0539545312 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
5 Hb_001221_090 0.0550578667 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
6 Hb_000189_630 0.0555682699 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
7 Hb_001723_140 0.059541086 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
8 Hb_001673_050 0.0600048127 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
9 Hb_000373_170 0.0640554351 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
10 Hb_000996_020 0.0643795218 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
11 Hb_004223_160 0.0677407922 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
12 Hb_000529_060 0.0680648628 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
13 Hb_088144_020 0.0688336878 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
14 Hb_002016_090 0.0695520967 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
15 Hb_015183_100 0.0696706815 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
16 Hb_000977_300 0.0708657124 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
17 Hb_000823_030 0.0713459108 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
18 Hb_002849_170 0.0714318223 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
19 Hb_002461_020 0.0714563888 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
20 Hb_004429_010 0.0724971412 - - calcineurin-like phosphoesterase [Manihot esculenta]

Gene co-expression network

sample Hb_003142_040 Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_003142_040--Hb_002968_070 Hb_001171_030 Hb_001171_030 Hb_003142_040--Hb_001171_030 Hb_001953_120 Hb_001953_120 Hb_003142_040--Hb_001953_120 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_000189_630 Hb_000189_630 Hb_003142_040--Hb_000189_630 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140 Hb_002968_070--Hb_001171_030 Hb_002968_070--Hb_001953_120 Hb_002016_090 Hb_002016_090 Hb_002968_070--Hb_002016_090 Hb_000373_170 Hb_000373_170 Hb_002968_070--Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_002968_070--Hb_000996_020 Hb_001171_030--Hb_001723_140 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060 Hb_004223_160 Hb_004223_160 Hb_001953_120--Hb_004223_160 Hb_088144_020 Hb_088144_020 Hb_001953_120--Hb_088144_020 Hb_005832_010 Hb_005832_010 Hb_001953_120--Hb_005832_010 Hb_000934_210 Hb_000934_210 Hb_001953_120--Hb_000934_210 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_000189_630--Hb_000977_300 Hb_004517_020 Hb_004517_020 Hb_000189_630--Hb_004517_020 Hb_005333_140 Hb_005333_140 Hb_000189_630--Hb_005333_140 Hb_005834_040 Hb_005834_040 Hb_000189_630--Hb_005834_040 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_001723_140--Hb_000529_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.456 44.9345 31.5179 22.2651 24.0009 19.936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7323 10.3432 10.9979 33.9867 28.099

CAGE analysis