Hb_002968_070

Information

Type -
Description -
Location Contig2968: 89139-95392
Sequence    

Annotation

kegg
ID rcu:RCOM_1588000
description transcription initiation factor, putative
nr
ID XP_012068247.1
description PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
swissprot
ID F4K4L7
description Transcription initiation factor TFIID subunit 4b OS=Arabidopsis thaliana GN=TAF4B PE=1 SV=1
trembl
ID A0A067LC15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16046 PE=4 SV=1
Gene Ontology
ID GO:0005669
description transcription initiation

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31047: 89164-94392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002968_070 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
2 Hb_003142_040 0.0305574894 - - Sf3a3 [Gossypium arboreum]
3 Hb_001171_030 0.0465915017 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
4 Hb_001953_120 0.055244609 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
5 Hb_002016_090 0.057497853 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
6 Hb_000373_170 0.0632900824 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
7 Hb_000996_020 0.0640297775 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
8 Hb_000189_630 0.0664156409 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
9 Hb_001723_140 0.0689534332 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
10 Hb_088144_020 0.0689993804 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
11 Hb_012940_040 0.0699176247 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
12 Hb_015183_100 0.0736450742 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
13 Hb_001221_090 0.0739347282 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
14 Hb_000529_060 0.0770087179 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
15 Hb_002461_020 0.0777943274 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
16 Hb_000645_130 0.0781605785 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
17 Hb_001534_210 0.0788981836 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
18 Hb_004223_160 0.0790399586 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
19 Hb_000377_050 0.0792851667 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
20 Hb_000977_300 0.0808325413 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]

Gene co-expression network

sample Hb_002968_070 Hb_002968_070 Hb_003142_040 Hb_003142_040 Hb_002968_070--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_002968_070--Hb_001171_030 Hb_001953_120 Hb_001953_120 Hb_002968_070--Hb_001953_120 Hb_002016_090 Hb_002016_090 Hb_002968_070--Hb_002016_090 Hb_000373_170 Hb_000373_170 Hb_002968_070--Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_002968_070--Hb_000996_020 Hb_003142_040--Hb_001171_030 Hb_003142_040--Hb_001953_120 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_000189_630 Hb_000189_630 Hb_003142_040--Hb_000189_630 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140 Hb_001171_030--Hb_001723_140 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060 Hb_004223_160 Hb_004223_160 Hb_001953_120--Hb_004223_160 Hb_088144_020 Hb_088144_020 Hb_001953_120--Hb_088144_020 Hb_005832_010 Hb_005832_010 Hb_001953_120--Hb_005832_010 Hb_000934_210 Hb_000934_210 Hb_001953_120--Hb_000934_210 Hb_000340_030 Hb_000340_030 Hb_002016_090--Hb_000340_030 Hb_002016_090--Hb_003142_040 Hb_012940_040 Hb_012940_040 Hb_002016_090--Hb_012940_040 Hb_002016_090--Hb_000373_170 Hb_003711_010 Hb_003711_010 Hb_002016_090--Hb_003711_010 Hb_000373_170--Hb_000996_020 Hb_004517_020 Hb_004517_020 Hb_000373_170--Hb_004517_020 Hb_000445_060 Hb_000445_060 Hb_000373_170--Hb_000445_060 Hb_001723_010 Hb_001723_010 Hb_000373_170--Hb_001723_010 Hb_000661_120 Hb_000661_120 Hb_000373_170--Hb_000661_120 Hb_002768_050 Hb_002768_050 Hb_000373_170--Hb_002768_050 Hb_000996_020--Hb_000445_060 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000996_020--Hb_000529_060 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9784 23.2024 17.5394 10.1695 10.4938 9.779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.99278 5.67584 5.67196 17.9826 15.4377

CAGE analysis