Hb_002016_090

Information

Type -
Description -
Location Contig2016: 103603-110693
Sequence    

Annotation

kegg
ID rcu:RCOM_1177300
description DNA mismatch repair protein pms2, putative
nr
ID XP_012082736.1
description PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
swissprot
ID Q941I6
description DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana GN=PMS1 PE=1 SV=1
trembl
ID A0A067JW62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13913 PE=4 SV=1
Gene Ontology
ID GO:0032300
description dna mismatch repair protein pms1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20497: 104642-105581 , PASA_asmbl_20499: 106822-107099 , PASA_asmbl_20500: 109786-110573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_090 0.0 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
2 Hb_002968_070 0.057497853 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
3 Hb_000340_030 0.0661319529 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
4 Hb_003142_040 0.0695520967 - - Sf3a3 [Gossypium arboreum]
5 Hb_012940_040 0.0705366206 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
6 Hb_000373_170 0.070656826 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
7 Hb_003711_010 0.0729040556 - - isopropylmalate synthase, putative [Ricinus communis]
8 Hb_001723_010 0.0798441537 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
9 Hb_016734_060 0.0810527134 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
10 Hb_000996_020 0.0819827543 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
11 Hb_000661_120 0.0820139624 - - cap binding protein, putative [Ricinus communis]
12 Hb_001171_030 0.0822835088 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
13 Hb_001430_080 0.0827065897 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
14 Hb_088144_020 0.0836081766 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
15 Hb_002849_170 0.0837178921 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
16 Hb_007426_060 0.0841640899 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
17 Hb_007955_050 0.0876596256 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
18 Hb_001953_120 0.0882356592 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
19 Hb_004976_010 0.0891450911 - - hypothetical protein RCOM_1429110 [Ricinus communis]
20 Hb_000676_330 0.0892749212 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002016_090 Hb_002016_090 Hb_002968_070 Hb_002968_070 Hb_002016_090--Hb_002968_070 Hb_000340_030 Hb_000340_030 Hb_002016_090--Hb_000340_030 Hb_003142_040 Hb_003142_040 Hb_002016_090--Hb_003142_040 Hb_012940_040 Hb_012940_040 Hb_002016_090--Hb_012940_040 Hb_000373_170 Hb_000373_170 Hb_002016_090--Hb_000373_170 Hb_003711_010 Hb_003711_010 Hb_002016_090--Hb_003711_010 Hb_002968_070--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_002968_070--Hb_001171_030 Hb_001953_120 Hb_001953_120 Hb_002968_070--Hb_001953_120 Hb_002968_070--Hb_000373_170 Hb_000996_020 Hb_000996_020 Hb_002968_070--Hb_000996_020 Hb_001723_010 Hb_001723_010 Hb_000340_030--Hb_001723_010 Hb_000139_320 Hb_000139_320 Hb_000340_030--Hb_000139_320 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_000340_030--Hb_003711_010 Hb_000529_060 Hb_000529_060 Hb_000340_030--Hb_000529_060 Hb_003142_040--Hb_001171_030 Hb_003142_040--Hb_001953_120 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_000189_630 Hb_000189_630 Hb_003142_040--Hb_000189_630 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140 Hb_012940_040--Hb_002968_070 Hb_000260_770 Hb_000260_770 Hb_012940_040--Hb_000260_770 Hb_012940_040--Hb_001171_030 Hb_015183_100 Hb_015183_100 Hb_012940_040--Hb_015183_100 Hb_000174_150 Hb_000174_150 Hb_012940_040--Hb_000174_150 Hb_000373_170--Hb_000996_020 Hb_004517_020 Hb_004517_020 Hb_000373_170--Hb_004517_020 Hb_000445_060 Hb_000445_060 Hb_000373_170--Hb_000445_060 Hb_000373_170--Hb_001723_010 Hb_000661_120 Hb_000661_120 Hb_000373_170--Hb_000661_120 Hb_002768_050 Hb_002768_050 Hb_000373_170--Hb_002768_050 Hb_003711_010--Hb_001723_010 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_003711_010--Hb_000373_170 Hb_003711_010--Hb_000139_320 Hb_003711_010--Hb_000661_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.7698 9.65104 7.28068 3.99507 4.32967 3.80624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74846 3.96361 2.25575 8.15828 5.63506

CAGE analysis