Hb_000445_060

Information

Type -
Description -
Location Contig445: 64677-74579
Sequence    

Annotation

kegg
ID rcu:RCOM_0562140
description hypothetical protein
nr
ID XP_012078320.1
description PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NU79
description JMS09K11.7 protein OS=Jatropha curcas GN=JMS09K11.7 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42868: 64702-74248 , PASA_asmbl_42869: 64736-74557 , PASA_asmbl_42871: 72207-74231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_060 0.0 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
2 Hb_000996_020 0.0404872747 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
3 Hb_000868_120 0.0492301602 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
4 Hb_000110_350 0.0506645769 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
5 Hb_002768_050 0.051066567 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
6 Hb_000661_120 0.0561468003 - - cap binding protein, putative [Ricinus communis]
7 Hb_000373_170 0.0582776069 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
8 Hb_000676_330 0.0588569005 - - protein with unknown function [Ricinus communis]
9 Hb_003929_210 0.0618342631 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_000529_060 0.0619803725 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
11 Hb_000179_190 0.0621943724 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
12 Hb_002811_040 0.0649987022 - - 5'->3' exoribonuclease, putative [Ricinus communis]
13 Hb_004517_020 0.065420166 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
14 Hb_023226_070 0.0655369268 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000975_210 0.0663222624 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
16 Hb_002461_020 0.0671135424 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
17 Hb_001534_210 0.0674912386 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
18 Hb_003939_060 0.0676064742 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000977_300 0.0689354719 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
20 Hb_060094_020 0.0689505511 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000445_060 Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_010287_020 Hb_010287_020 Hb_000868_120--Hb_010287_020 Hb_033642_120 Hb_033642_120 Hb_000868_120--Hb_033642_120 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220 Hb_000868_120--Hb_000661_120 Hb_170077_010 Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000110_350--Hb_003929_210 Hb_000110_350--Hb_002768_050 Hb_000110_350--Hb_000996_020 Hb_000008_240 Hb_000008_240 Hb_002768_050--Hb_000008_240 Hb_002768_050--Hb_000676_330 Hb_004517_020 Hb_004517_020 Hb_002768_050--Hb_004517_020 Hb_002768_050--Hb_003929_210 Hb_000661_120--Hb_000373_170 Hb_000340_030 Hb_000340_030 Hb_000661_120--Hb_000340_030 Hb_000661_120--Hb_000529_060 Hb_000373_170--Hb_004517_020 Hb_001723_010 Hb_001723_010 Hb_000373_170--Hb_001723_010 Hb_000373_170--Hb_002768_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.36431 15.2298 14.1248 8.53104 7.73522 7.6841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.07862 5.52521 5.47567 8.68244 11.3413

CAGE analysis