Hb_000996_020

Information

Type -
Description -
Location Contig996: 17070-21098
Sequence    

Annotation

kegg
ID rcu:RCOM_1686350
description RNA-binding protein nob1, putative
nr
ID XP_012086932.1
description PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
swissprot
ID Q5RBB3
description RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1
trembl
ID A0A067JNJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20613 PE=4 SV=1
Gene Ontology
ID GO:0005737
description rna-binding protein nob1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64825: 17100-21156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_020 0.0 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
2 Hb_000445_060 0.0404872747 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
3 Hb_000373_170 0.044328095 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
4 Hb_002461_020 0.0468913068 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
5 Hb_000529_060 0.0525549697 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
6 Hb_000661_120 0.0540036946 - - cap binding protein, putative [Ricinus communis]
7 Hb_005333_140 0.0542240224 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
8 Hb_000110_350 0.0548239259 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
9 Hb_003929_210 0.0571653888 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_003939_060 0.0589280521 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000676_330 0.0598358284 - - protein with unknown function [Ricinus communis]
12 Hb_000030_140 0.0599362838 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
13 Hb_002768_050 0.0605889096 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
14 Hb_000260_760 0.060726915 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
15 Hb_170077_010 0.0614530139 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
16 Hb_004517_020 0.063792013 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
17 Hb_002968_070 0.0640297775 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
18 Hb_005701_050 0.0640559171 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
19 Hb_003142_040 0.0643795218 - - Sf3a3 [Gossypium arboreum]
20 Hb_000206_160 0.0657404524 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000996_020 Hb_000996_020 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000445_060--Hb_000661_120 Hb_000445_060--Hb_000373_170 Hb_004517_020 Hb_004517_020 Hb_000373_170--Hb_004517_020 Hb_001723_010 Hb_001723_010 Hb_000373_170--Hb_001723_010 Hb_000373_170--Hb_000661_120 Hb_000373_170--Hb_002768_050 Hb_002461_020--Hb_005333_140 Hb_000030_140 Hb_000030_140 Hb_002461_020--Hb_000030_140 Hb_000260_760 Hb_000260_760 Hb_002461_020--Hb_000260_760 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090 Hb_170077_010 Hb_170077_010 Hb_002461_020--Hb_170077_010 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_000340_030 Hb_000340_030 Hb_000661_120--Hb_000340_030 Hb_000661_120--Hb_000529_060 Hb_000661_120--Hb_000868_120 Hb_023344_140 Hb_023344_140 Hb_005333_140--Hb_023344_140 Hb_005333_140--Hb_000046_600 Hb_000189_630 Hb_000189_630 Hb_005333_140--Hb_000189_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03246 11.1859 9.97664 6.97907 5.7792 5.69441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.20904 3.80435 3.67562 8.07976 9.08421

CAGE analysis