Hb_000189_630

Information

Type -
Description -
Location Contig189: 538638-546086
Sequence    

Annotation

kegg
ID rcu:RCOM_1428890
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012089199.1
description PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067JI40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23449 PE=3 SV=1
Gene Ontology
ID GO:0005802
description serine threonine-protein kinase edr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18723: 538874-539732 , PASA_asmbl_18724: 539838-541485 , PASA_asmbl_18725: 541486-541707 , PASA_asmbl_18726: 542629-543082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_630 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
2 Hb_003142_040 0.0555682699 - - Sf3a3 [Gossypium arboreum]
3 Hb_001171_030 0.0565264626 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
4 Hb_000977_300 0.0579259656 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
5 Hb_004517_020 0.0613355854 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
6 Hb_005333_140 0.0623822864 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
7 Hb_005834_040 0.0634517019 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
8 Hb_000529_060 0.064077414 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
9 Hb_001221_090 0.0648386472 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
10 Hb_002968_070 0.0664156409 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
11 Hb_001723_010 0.0674435812 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
12 Hb_000340_030 0.0675319066 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
13 Hb_001534_210 0.0687438858 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
14 Hb_000996_020 0.0704839093 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
15 Hb_102438_030 0.0707927346 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
16 Hb_000120_910 0.0708211134 - - plant ubiquilin, putative [Ricinus communis]
17 Hb_000373_170 0.0709863868 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
18 Hb_001673_050 0.0713843119 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
19 Hb_000445_060 0.0716990473 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
20 Hb_004032_230 0.0720451962 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_630 Hb_000189_630 Hb_003142_040 Hb_003142_040 Hb_000189_630--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_000189_630--Hb_001171_030 Hb_000977_300 Hb_000977_300 Hb_000189_630--Hb_000977_300 Hb_004517_020 Hb_004517_020 Hb_000189_630--Hb_004517_020 Hb_005333_140 Hb_005333_140 Hb_000189_630--Hb_005333_140 Hb_005834_040 Hb_005834_040 Hb_000189_630--Hb_005834_040 Hb_002968_070 Hb_002968_070 Hb_003142_040--Hb_002968_070 Hb_003142_040--Hb_001171_030 Hb_001953_120 Hb_001953_120 Hb_003142_040--Hb_001953_120 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140 Hb_001171_030--Hb_002968_070 Hb_001171_030--Hb_001723_140 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060 Hb_000977_300--Hb_004517_020 Hb_000977_300--Hb_000529_060 Hb_000120_910 Hb_000120_910 Hb_000977_300--Hb_000120_910 Hb_000110_350 Hb_000110_350 Hb_000977_300--Hb_000110_350 Hb_004517_020--Hb_000120_910 Hb_001723_010 Hb_001723_010 Hb_004517_020--Hb_001723_010 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_000373_170 Hb_000373_170 Hb_004517_020--Hb_000373_170 Hb_004517_020--Hb_000110_350 Hb_002461_020 Hb_002461_020 Hb_005333_140--Hb_002461_020 Hb_005333_140--Hb_000529_060 Hb_000996_020 Hb_000996_020 Hb_005333_140--Hb_000996_020 Hb_023344_140 Hb_023344_140 Hb_005333_140--Hb_023344_140 Hb_000046_600 Hb_000046_600 Hb_005333_140--Hb_000046_600 Hb_005834_040--Hb_000110_350 Hb_009302_030 Hb_009302_030 Hb_005834_040--Hb_009302_030 Hb_005834_040--Hb_004517_020 Hb_000445_060 Hb_000445_060 Hb_005834_040--Hb_000445_060 Hb_170077_010 Hb_170077_010 Hb_005834_040--Hb_170077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.24425 19.9286 15.7439 9.51108 11.0382 7.05023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.49411 4.28296 5.81514 11.8839 10.3489

CAGE analysis