Hb_000120_910

Information

Type -
Description -
Location Contig120: 697207-704157
Sequence    

Annotation

kegg
ID rcu:RCOM_0873810
description plant ubiquilin, putative
nr
ID XP_002521706.1
description plant ubiquilin, putative [Ricinus communis]
swissprot
ID Q9SII8
description Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana GN=DSK2B PE=1 SV=1
trembl
ID B9S6T7
description Plant ubiquilin, putative OS=Ricinus communis GN=RCOM_0873810 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ubiquitin domain-containing protein dsk2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06225: 697234-704185 , PASA_asmbl_06226: 697992-698713 , PASA_asmbl_06227: 697992-698373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_910 0.0 - - plant ubiquilin, putative [Ricinus communis]
2 Hb_004517_020 0.0404297067 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
3 Hb_000977_300 0.0484562903 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
4 Hb_027654_020 0.0586119664 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
5 Hb_000949_020 0.0588528923 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
6 Hb_000809_160 0.0591295486 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
7 Hb_001723_010 0.0595670847 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
8 Hb_001300_010 0.0613032428 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000529_060 0.0616482758 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
10 Hb_000008_240 0.0625929178 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002768_050 0.0658357065 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
12 Hb_003398_080 0.0663853617 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
13 Hb_031641_010 0.0677278602 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000069_130 0.0681134594 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
15 Hb_001699_010 0.0688897094 - - drought-inducible protein [Manihot esculenta]
16 Hb_003912_040 0.068976643 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
17 Hb_000340_030 0.0694058089 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
18 Hb_004994_240 0.0695155808 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
19 Hb_000739_180 0.0696337418 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
20 Hb_004429_010 0.0696806177 - - calcineurin-like phosphoesterase [Manihot esculenta]

Gene co-expression network

sample Hb_000120_910 Hb_000120_910 Hb_004517_020 Hb_004517_020 Hb_000120_910--Hb_004517_020 Hb_000977_300 Hb_000977_300 Hb_000120_910--Hb_000977_300 Hb_027654_020 Hb_027654_020 Hb_000120_910--Hb_027654_020 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160 Hb_001723_010 Hb_001723_010 Hb_000120_910--Hb_001723_010 Hb_004517_020--Hb_001723_010 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_000373_170 Hb_000373_170 Hb_004517_020--Hb_000373_170 Hb_000110_350 Hb_000110_350 Hb_004517_020--Hb_000110_350 Hb_000529_060 Hb_000529_060 Hb_000977_300--Hb_000529_060 Hb_001171_030 Hb_001171_030 Hb_000977_300--Hb_001171_030 Hb_000189_630 Hb_000189_630 Hb_000977_300--Hb_000189_630 Hb_000977_300--Hb_000110_350 Hb_000300_550 Hb_000300_550 Hb_027654_020--Hb_000300_550 Hb_005723_020 Hb_005723_020 Hb_027654_020--Hb_005723_020 Hb_027654_020--Hb_000529_060 Hb_103747_020 Hb_103747_020 Hb_027654_020--Hb_103747_020 Hb_000046_600 Hb_000046_600 Hb_027654_020--Hb_000046_600 Hb_001673_050 Hb_001673_050 Hb_000949_020--Hb_001673_050 Hb_004429_010 Hb_004429_010 Hb_000949_020--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000949_020--Hb_002284_170 Hb_004129_070 Hb_004129_070 Hb_000949_020--Hb_004129_070 Hb_000949_020--Hb_004517_020 Hb_000094_090 Hb_000094_090 Hb_000809_160--Hb_000094_090 Hb_002477_250 Hb_002477_250 Hb_000809_160--Hb_002477_250 Hb_031641_010 Hb_031641_010 Hb_000809_160--Hb_031641_010 Hb_000866_450 Hb_000866_450 Hb_000809_160--Hb_000866_450 Hb_000363_120 Hb_000363_120 Hb_000809_160--Hb_000363_120 Hb_000340_030 Hb_000340_030 Hb_001723_010--Hb_000340_030 Hb_003711_010 Hb_003711_010 Hb_001723_010--Hb_003711_010 Hb_000139_320 Hb_000139_320 Hb_001723_010--Hb_000139_320 Hb_001723_010--Hb_000373_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9354 68.1253 53.2403 50.5843 39.1301 31.1503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8062 20.9141 28.8103 39.8743 34.9924

CAGE analysis