Hb_002284_170

Information

Type -
Description -
Location Contig2284: 127714-132387
Sequence    

Annotation

kegg
ID pop:POPTR_0005s27540g
description POPTRDRAFT_1079934; hypothetical protein
nr
ID XP_012073611.1
description PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
swissprot
ID Q93VJ2
description Serine/threonine-protein kinase/endoribonuclease IRE1b OS=Arabidopsis thaliana GN=IRE1B PE=2 SV=1
trembl
ID B9H5U0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s27540g PE=4 SV=2
Gene Ontology
ID GO:0004540
description serine threonine-protein kinase endoribonuclease ire1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23807: 124463-127198 , PASA_asmbl_23808: 131354-131470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_170 0.0 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
2 Hb_000958_150 0.0519525154 - - Actin, putative [Ricinus communis]
3 Hb_002092_070 0.056820367 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
4 Hb_004429_010 0.0570035947 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_000949_020 0.0624420797 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
6 Hb_000700_060 0.0632823097 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
7 Hb_009252_050 0.0650766333 - - protein binding protein, putative [Ricinus communis]
8 Hb_001033_050 0.0687736649 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
9 Hb_001489_100 0.0689521571 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
10 Hb_002027_280 0.0705311413 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
11 Hb_000069_130 0.071170164 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
12 Hb_102438_030 0.0712664194 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
13 Hb_000479_240 0.0729830758 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
14 Hb_002045_250 0.0745502142 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
15 Hb_010712_090 0.0754975122 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
16 Hb_000352_070 0.0766915942 - - Potassium transporter, putative [Ricinus communis]
17 Hb_001673_050 0.0783665535 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
18 Hb_027654_020 0.0784147666 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
19 Hb_000120_910 0.0784290141 - - plant ubiquilin, putative [Ricinus communis]
20 Hb_001221_090 0.0789375662 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_170 Hb_002284_170 Hb_000958_150 Hb_000958_150 Hb_002284_170--Hb_000958_150 Hb_002092_070 Hb_002092_070 Hb_002284_170--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002284_170--Hb_004429_010 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_009252_050 Hb_009252_050 Hb_002284_170--Hb_009252_050 Hb_056987_010 Hb_056987_010 Hb_000958_150--Hb_056987_010 Hb_102438_030 Hb_102438_030 Hb_000958_150--Hb_102438_030 Hb_030545_030 Hb_030545_030 Hb_000958_150--Hb_030545_030 Hb_000958_150--Hb_002092_070 Hb_096819_010 Hb_096819_010 Hb_000958_150--Hb_096819_010 Hb_002045_250 Hb_002045_250 Hb_002092_070--Hb_002045_250 Hb_002092_070--Hb_004429_010 Hb_001221_090 Hb_001221_090 Hb_002092_070--Hb_001221_090 Hb_002092_070--Hb_009252_050 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_004429_010--Hb_009252_050 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_004429_010--Hb_001221_090 Hb_000120_910 Hb_000120_910 Hb_000949_020--Hb_000120_910 Hb_001673_050 Hb_001673_050 Hb_000949_020--Hb_001673_050 Hb_000949_020--Hb_004429_010 Hb_004129_070 Hb_004129_070 Hb_000949_020--Hb_004129_070 Hb_004517_020 Hb_004517_020 Hb_000949_020--Hb_004517_020 Hb_002119_090 Hb_002119_090 Hb_000700_060--Hb_002119_090 Hb_004785_030 Hb_004785_030 Hb_000700_060--Hb_004785_030 Hb_006738_050 Hb_006738_050 Hb_000700_060--Hb_006738_050 Hb_004410_070 Hb_004410_070 Hb_000700_060--Hb_004410_070 Hb_000059_020 Hb_000059_020 Hb_000700_060--Hb_000059_020 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.37488 10.3181 5.93855 6.85629 6.60731 5.36943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32349 2.37693 2.62316 5.62484 3.97417

CAGE analysis