Hb_000700_060

Information

Type -
Description -
Location Contig700: 111070-112257
Sequence    

Annotation

kegg
ID rcu:RCOM_1721320
description hypothetical protein
nr
ID XP_012085143.1
description PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S551
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1721320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54792: 110148-112851 , PASA_asmbl_54793: 107125-112785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_060 0.0 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
2 Hb_002119_090 0.0525254604 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
3 Hb_004785_030 0.0621816656 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
4 Hb_006738_050 0.0622698027 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
5 Hb_002284_170 0.0632823097 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
6 Hb_004410_070 0.0681130735 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
7 Hb_000059_020 0.0740511769 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
8 Hb_007017_070 0.0774000617 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
9 Hb_001259_110 0.0792380157 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
10 Hb_000069_130 0.0798552792 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
11 Hb_102438_030 0.0824819715 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
12 Hb_010712_090 0.083082075 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
13 Hb_000940_200 0.0831511581 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
14 Hb_000363_120 0.0845252493 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
15 Hb_002903_140 0.0852327695 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
16 Hb_000958_150 0.0859414679 - - Actin, putative [Ricinus communis]
17 Hb_000197_030 0.0880189821 - - hypothetical protein RCOM_1447500 [Ricinus communis]
18 Hb_000139_320 0.0889731961 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
19 Hb_030545_030 0.0897233244 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
20 Hb_000703_200 0.0904128596 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000700_060 Hb_000700_060 Hb_002119_090 Hb_002119_090 Hb_000700_060--Hb_002119_090 Hb_004785_030 Hb_004785_030 Hb_000700_060--Hb_004785_030 Hb_006738_050 Hb_006738_050 Hb_000700_060--Hb_006738_050 Hb_002284_170 Hb_002284_170 Hb_000700_060--Hb_002284_170 Hb_004410_070 Hb_004410_070 Hb_000700_060--Hb_004410_070 Hb_000059_020 Hb_000059_020 Hb_000700_060--Hb_000059_020 Hb_002119_090--Hb_004785_030 Hb_000069_130 Hb_000069_130 Hb_002119_090--Hb_000069_130 Hb_002119_090--Hb_006738_050 Hb_001257_100 Hb_001257_100 Hb_002119_090--Hb_001257_100 Hb_002119_090--Hb_002284_170 Hb_005188_040 Hb_005188_040 Hb_004785_030--Hb_005188_040 Hb_044653_020 Hb_044653_020 Hb_004785_030--Hb_044653_020 Hb_003604_050 Hb_003604_050 Hb_004785_030--Hb_003604_050 Hb_020805_150 Hb_020805_150 Hb_004785_030--Hb_020805_150 Hb_006738_050--Hb_004410_070 Hb_000205_240 Hb_000205_240 Hb_006738_050--Hb_000205_240 Hb_007017_070 Hb_007017_070 Hb_006738_050--Hb_007017_070 Hb_004899_040 Hb_004899_040 Hb_006738_050--Hb_004899_040 Hb_000958_150 Hb_000958_150 Hb_002284_170--Hb_000958_150 Hb_002092_070 Hb_002092_070 Hb_002284_170--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002284_170--Hb_004429_010 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_009252_050 Hb_009252_050 Hb_002284_170--Hb_009252_050 Hb_004410_070--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_004410_070--Hb_000069_130 Hb_000862_040 Hb_000862_040 Hb_000059_020--Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3014 69.5455 30.1036 32.0573 29.6529 24.2675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.333 13.7596 14.7735 30.4121 17.5705

CAGE analysis