Hb_001257_100

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig1257: 145758-154601
Sequence    

Annotation

kegg
ID cic:CICLE_v10028409mg
description hypothetical protein
nr
ID XP_012075044.1
description PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
swissprot
ID Q9FV71
description Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1
trembl
ID A0A067KKC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10856 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e2f transcription factor-1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07848: 145787-145958 , PASA_asmbl_07849: 146071-154638 , PASA_asmbl_07850: 149676-149922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001257_100 0.0 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
2 Hb_000671_080 0.0691580205 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
3 Hb_000926_150 0.0716727263 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
4 Hb_026198_060 0.0746508863 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
5 Hb_002812_010 0.0746867857 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
6 Hb_000649_250 0.0754203923 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
7 Hb_002119_090 0.0775594901 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
8 Hb_005288_140 0.0797597294 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
9 Hb_001259_120 0.0805905539 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
10 Hb_011249_060 0.0814154919 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
11 Hb_001329_200 0.0836295169 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
12 Hb_003599_030 0.0838011052 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
13 Hb_004785_030 0.0839830534 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
14 Hb_002928_190 0.0842803056 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
15 Hb_003604_050 0.0844297918 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
16 Hb_004517_020 0.0850628043 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
17 Hb_000418_010 0.0851633357 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
18 Hb_003849_220 0.0866144181 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
19 Hb_000802_090 0.086997043 - - ornithine aminotransferase, putative [Ricinus communis]
20 Hb_001862_110 0.0876919394 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001257_100 Hb_001257_100 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_000926_150 Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_026198_060 Hb_026198_060 Hb_001257_100--Hb_026198_060 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_003599_030 Hb_003599_030 Hb_000671_080--Hb_003599_030 Hb_024650_080 Hb_024650_080 Hb_000671_080--Hb_024650_080 Hb_000418_010 Hb_000418_010 Hb_000671_080--Hb_000418_010 Hb_003849_220 Hb_003849_220 Hb_000671_080--Hb_003849_220 Hb_000671_080--Hb_000926_150 Hb_116349_130 Hb_116349_130 Hb_000926_150--Hb_116349_130 Hb_000035_100 Hb_000035_100 Hb_000926_150--Hb_000035_100 Hb_000856_300 Hb_000856_300 Hb_000926_150--Hb_000856_300 Hb_000926_150--Hb_024650_080 Hb_000373_170 Hb_000373_170 Hb_000926_150--Hb_000373_170 Hb_005288_140 Hb_005288_140 Hb_026198_060--Hb_005288_140 Hb_026198_060--Hb_000649_250 Hb_022425_060 Hb_022425_060 Hb_026198_060--Hb_022425_060 Hb_004517_020 Hb_004517_020 Hb_026198_060--Hb_004517_020 Hb_001259_120 Hb_001259_120 Hb_026198_060--Hb_001259_120 Hb_009486_160 Hb_009486_160 Hb_002812_010--Hb_009486_160 Hb_001862_110 Hb_001862_110 Hb_002812_010--Hb_001862_110 Hb_159295_010 Hb_159295_010 Hb_002812_010--Hb_159295_010 Hb_002812_010--Hb_000926_150 Hb_008948_140 Hb_008948_140 Hb_002812_010--Hb_008948_140 Hb_003918_030 Hb_003918_030 Hb_000649_250--Hb_003918_030 Hb_004899_040 Hb_004899_040 Hb_000649_250--Hb_004899_040 Hb_000649_250--Hb_022425_060 Hb_000649_250--Hb_004517_020 Hb_004785_030 Hb_004785_030 Hb_002119_090--Hb_004785_030 Hb_000700_060 Hb_000700_060 Hb_002119_090--Hb_000700_060 Hb_000069_130 Hb_000069_130 Hb_002119_090--Hb_000069_130 Hb_006738_050 Hb_006738_050 Hb_002119_090--Hb_006738_050 Hb_002284_170 Hb_002284_170 Hb_002119_090--Hb_002284_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.59948 14.6905 7.02582 9.00612 4.53328 4.25524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41661 3.38206 2.76429 7.03677 5.61153

CAGE analysis