Hb_001259_120

Information

Type -
Description -
Location Contig1259: 130924-132603
Sequence    

Annotation

kegg
ID dosa:Os04t0503600-01
description Os04g0503600; Similar to OSIGBa0112M24.5 protein.
nr
ID KCW82944.1
description hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CXM9
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C043222 PE=4 SV=1
Gene Ontology
ID GO:0004674
description calmodulin-binding receptor-like cytoplasmic kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07922: 107493-132068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001259_120 0.0 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
2 Hb_000010_420 0.0506738304 - - Callose synthase 10 [Morus notabilis]
3 Hb_026198_060 0.0756533968 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
4 Hb_004645_070 0.0799626285 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
5 Hb_001257_100 0.0805905539 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
6 Hb_002005_030 0.080708033 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
7 Hb_001167_050 0.0828533303 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
8 Hb_006907_140 0.0877466322 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001259_110 0.0877794698 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
10 Hb_001103_090 0.088314671 - - PREDICTED: patellin-3 [Populus euphratica]
11 Hb_001341_160 0.088703249 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
12 Hb_001414_040 0.089368909 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
13 Hb_000635_200 0.0898025512 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
14 Hb_009615_160 0.0898663186 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
15 Hb_002928_190 0.0919198589 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
16 Hb_000371_060 0.0920023102 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
17 Hb_170077_010 0.0938261179 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
18 Hb_020805_150 0.0948531131 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_005649_080 0.0954489819 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
20 Hb_009372_020 0.0971100279 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_001259_120 Hb_001259_120 Hb_000010_420 Hb_000010_420 Hb_001259_120--Hb_000010_420 Hb_026198_060 Hb_026198_060 Hb_001259_120--Hb_026198_060 Hb_004645_070 Hb_004645_070 Hb_001259_120--Hb_004645_070 Hb_001257_100 Hb_001257_100 Hb_001259_120--Hb_001257_100 Hb_002005_030 Hb_002005_030 Hb_001259_120--Hb_002005_030 Hb_001167_050 Hb_001167_050 Hb_001259_120--Hb_001167_050 Hb_000010_420--Hb_004645_070 Hb_000010_420--Hb_001167_050 Hb_001341_160 Hb_001341_160 Hb_000010_420--Hb_001341_160 Hb_001904_030 Hb_001904_030 Hb_000010_420--Hb_001904_030 Hb_009615_160 Hb_009615_160 Hb_000010_420--Hb_009615_160 Hb_005288_140 Hb_005288_140 Hb_026198_060--Hb_005288_140 Hb_000649_250 Hb_000649_250 Hb_026198_060--Hb_000649_250 Hb_022425_060 Hb_022425_060 Hb_026198_060--Hb_022425_060 Hb_026198_060--Hb_001257_100 Hb_004517_020 Hb_004517_020 Hb_026198_060--Hb_004517_020 Hb_005568_040 Hb_005568_040 Hb_004645_070--Hb_005568_040 Hb_000479_240 Hb_000479_240 Hb_004645_070--Hb_000479_240 Hb_000331_580 Hb_000331_580 Hb_004645_070--Hb_000331_580 Hb_000635_200 Hb_000635_200 Hb_004645_070--Hb_000635_200 Hb_004645_070--Hb_001167_050 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_000926_150 Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_001257_100--Hb_000649_250 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_000172_340 Hb_000172_340 Hb_002005_030--Hb_000172_340 Hb_006907_140 Hb_006907_140 Hb_002005_030--Hb_006907_140 Hb_002005_030--Hb_001341_160 Hb_002005_030--Hb_000010_420 Hb_002005_030--Hb_001904_030 Hb_007245_020 Hb_007245_020 Hb_002005_030--Hb_007245_020 Hb_001167_050--Hb_000331_580 Hb_001167_050--Hb_005568_040 Hb_012286_040 Hb_012286_040 Hb_001167_050--Hb_012286_040 Hb_001951_170 Hb_001951_170 Hb_001167_050--Hb_001951_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.6357 25.6747 12.0027 19.0624 8.53325 8.94283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38555 4.57871 6.35479 17.1336 10.8984

CAGE analysis