Hb_001341_160

Information

Type -
Description -
Location Contig1341: 154489-168389
Sequence    

Annotation

kegg
ID rcu:RCOM_1400310
description sumo ligase, putative
nr
ID XP_012064860.1
description PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
swissprot
ID Q680Q4
description E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2
trembl
ID A0A067L6K2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05563 PE=4 SV=1
Gene Ontology
ID GO:0008270
description dna-binding protein with miz sp-ring zinc finge isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09700: 154741-167963 , PASA_asmbl_09701: 154737-154976 , PASA_asmbl_09704: 161526-161853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_160 0.0 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
2 Hb_003604_050 0.0565305616 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
3 Hb_000172_340 0.0666396199 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
4 Hb_000010_420 0.0670099228 - - Callose synthase 10 [Morus notabilis]
5 Hb_001904_030 0.067943161 - - PREDICTED: importin-5 [Jatropha curcas]
6 Hb_004223_160 0.0695181998 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
7 Hb_008948_140 0.0706701945 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
8 Hb_002005_030 0.0729799163 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_000428_030 0.0731947842 - - hypothetical protein RCOM_1520720 [Ricinus communis]
10 Hb_044486_040 0.0746843505 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
11 Hb_005832_010 0.075227666 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
12 Hb_005765_040 0.0761501671 - - transcription elongation factor s-II, putative [Ricinus communis]
13 Hb_015183_100 0.0779468228 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
14 Hb_001646_010 0.0794887794 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
15 Hb_006907_140 0.0803934318 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011202_030 0.0819404838 - - arsenite-resistance protein, putative [Ricinus communis]
17 Hb_000479_240 0.0819455039 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
18 Hb_000373_170 0.0825482603 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
19 Hb_007765_030 0.0829108853 - - PREDICTED: neutral ceramidase [Jatropha curcas]
20 Hb_000170_100 0.0832860467 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]

Gene co-expression network

sample Hb_001341_160 Hb_001341_160 Hb_003604_050 Hb_003604_050 Hb_001341_160--Hb_003604_050 Hb_000172_340 Hb_000172_340 Hb_001341_160--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_001341_160--Hb_000010_420 Hb_001904_030 Hb_001904_030 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140 Hb_003604_050--Hb_001904_030 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_000172_340--Hb_001904_030 Hb_000172_340--Hb_005832_010 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_123531_010 Hb_123531_010 Hb_000172_340--Hb_123531_010 Hb_007245_020 Hb_007245_020 Hb_000172_340--Hb_007245_020 Hb_000066_150 Hb_000066_150 Hb_000172_340--Hb_000066_150 Hb_001259_120 Hb_001259_120 Hb_000010_420--Hb_001259_120 Hb_004645_070 Hb_004645_070 Hb_000010_420--Hb_004645_070 Hb_001167_050 Hb_001167_050 Hb_000010_420--Hb_001167_050 Hb_000010_420--Hb_001904_030 Hb_009615_160 Hb_009615_160 Hb_000010_420--Hb_009615_160 Hb_001904_030--Hb_005832_010 Hb_001904_030--Hb_000479_240 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_004223_160--Hb_005832_010 Hb_001953_120 Hb_001953_120 Hb_004223_160--Hb_001953_120 Hb_001951_170 Hb_001951_170 Hb_004223_160--Hb_001951_170 Hb_009476_090 Hb_009476_090 Hb_004223_160--Hb_009476_090 Hb_004223_160--Hb_001904_030 Hb_003142_040 Hb_003142_040 Hb_004223_160--Hb_003142_040 Hb_008948_140--Hb_000479_240 Hb_000856_300 Hb_000856_300 Hb_008948_140--Hb_000856_300 Hb_000862_040 Hb_000862_040 Hb_008948_140--Hb_000862_040 Hb_001723_010 Hb_001723_010 Hb_008948_140--Hb_001723_010 Hb_000926_150 Hb_000926_150 Hb_008948_140--Hb_000926_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.78914 24.4633 12.0115 11.5992 8.67275 10.5063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.75974 4.06003 4.2579 17.0325 11.7771

CAGE analysis