Hb_004223_160

Information

Type -
Description -
Location Contig4223: 79272-96469
Sequence    

Annotation

kegg
ID rcu:RCOM_1597380
description 5'->3' exoribonuclease, putative
nr
ID XP_012073822.1
description PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
swissprot
ID Q9FQ03
description 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1
trembl
ID A0A067KL13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08232 PE=4 SV=1
Gene Ontology
ID GO:0003676
description 5 -3 exoribonuclease 3-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41763: 79276-96477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_160 0.0 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
2 Hb_005832_010 0.0470055167 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
3 Hb_001953_120 0.0556900935 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
4 Hb_001951_170 0.0601392183 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
5 Hb_009476_090 0.0633177236 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
6 Hb_001904_030 0.0671369711 - - PREDICTED: importin-5 [Jatropha curcas]
7 Hb_003142_040 0.0677407922 - - Sf3a3 [Gossypium arboreum]
8 Hb_000172_340 0.0691669812 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
9 Hb_001341_160 0.0695181998 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
10 Hb_000934_210 0.071143302 - - suppressor of ty, putative [Ricinus communis]
11 Hb_003604_050 0.0737519315 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
12 Hb_001221_090 0.0748071336 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
13 Hb_004109_380 0.0752055688 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
14 Hb_001673_050 0.0761498604 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
15 Hb_014720_020 0.0764266408 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
16 Hb_123531_010 0.076687512 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
17 Hb_003216_090 0.0767067413 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
18 Hb_027472_220 0.0767716926 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
19 Hb_001031_090 0.0768614141 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
20 Hb_008948_140 0.0780634909 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]

Gene co-expression network

sample Hb_004223_160 Hb_004223_160 Hb_005832_010 Hb_005832_010 Hb_004223_160--Hb_005832_010 Hb_001953_120 Hb_001953_120 Hb_004223_160--Hb_001953_120 Hb_001951_170 Hb_001951_170 Hb_004223_160--Hb_001951_170 Hb_009476_090 Hb_009476_090 Hb_004223_160--Hb_009476_090 Hb_001904_030 Hb_001904_030 Hb_004223_160--Hb_001904_030 Hb_003142_040 Hb_003142_040 Hb_004223_160--Hb_003142_040 Hb_005832_010--Hb_001904_030 Hb_005832_010--Hb_009476_090 Hb_002007_110 Hb_002007_110 Hb_005832_010--Hb_002007_110 Hb_005832_010--Hb_001951_170 Hb_000172_340 Hb_000172_340 Hb_005832_010--Hb_000172_340 Hb_001953_120--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001953_120--Hb_002968_070 Hb_088144_020 Hb_088144_020 Hb_001953_120--Hb_088144_020 Hb_001953_120--Hb_005832_010 Hb_000934_210 Hb_000934_210 Hb_001953_120--Hb_000934_210 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_006031_010 Hb_006031_010 Hb_001951_170--Hb_006031_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_001951_170--Hb_002007_110 Hb_000331_580 Hb_000331_580 Hb_001951_170--Hb_000331_580 Hb_000377_050 Hb_000377_050 Hb_009476_090--Hb_000377_050 Hb_000703_130 Hb_000703_130 Hb_009476_090--Hb_000703_130 Hb_000025_710 Hb_000025_710 Hb_009476_090--Hb_000025_710 Hb_001959_270 Hb_001959_270 Hb_009476_090--Hb_001959_270 Hb_001904_030--Hb_000172_340 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_003142_040--Hb_002968_070 Hb_001171_030 Hb_001171_030 Hb_003142_040--Hb_001171_030 Hb_003142_040--Hb_001221_090 Hb_000189_630 Hb_000189_630 Hb_003142_040--Hb_000189_630 Hb_001723_140 Hb_001723_140 Hb_003142_040--Hb_001723_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.78076 19.8473 8.86616 9.64101 9.29503 8.68658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4344 4.79035 3.86558 15.3929 13.0614

CAGE analysis