Hb_003604_050

Information

Type -
Description -
Location Contig3604: 79650-96627
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09700g
description POPTRDRAFT_650917; hypothetical protein
nr
ID XP_012065799.1
description PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LJD8
description MAP3K epsilon protein kinase 1 OS=Arabidopsis thaliana GN=M3KE1 PE=1 SV=1
trembl
ID A0A067L7U7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24209 PE=4 SV=1
Gene Ontology
ID GO:0005488
description serine threonine-protein kinase sepa-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37117: 46640-96499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003604_050 0.0 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
2 Hb_001904_030 0.0555536546 - - PREDICTED: importin-5 [Jatropha curcas]
3 Hb_001341_160 0.0565305616 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
4 Hb_000479_240 0.0584158492 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
5 Hb_005832_010 0.0634570001 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
6 Hb_002928_190 0.0655752401 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
7 Hb_004785_030 0.0677034056 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
8 Hb_001951_170 0.0678003566 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_014720_020 0.0696853166 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
10 Hb_003581_170 0.0716525054 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
11 Hb_004223_160 0.0737519315 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
12 Hb_000172_340 0.0738688938 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
13 Hb_000856_020 0.0741014362 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
14 Hb_000105_040 0.0744769442 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
15 Hb_000170_100 0.0772121597 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
16 Hb_005568_040 0.0772857997 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
17 Hb_002400_140 0.0784087745 - - protein kinase, putative [Ricinus communis]
18 Hb_003939_060 0.0791249998 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002005_030 0.0795178009 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
20 Hb_000331_580 0.0808746674 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_003604_050 Hb_003604_050 Hb_001904_030 Hb_001904_030 Hb_003604_050--Hb_001904_030 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_001904_030--Hb_000479_240 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_001341_160--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_001341_160--Hb_000010_420 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140 Hb_005568_040 Hb_005568_040 Hb_000479_240--Hb_005568_040 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000008_240 Hb_000008_240 Hb_000479_240--Hb_000008_240 Hb_004645_070 Hb_004645_070 Hb_000479_240--Hb_004645_070 Hb_005832_010--Hb_004223_160 Hb_009476_090 Hb_009476_090 Hb_005832_010--Hb_009476_090 Hb_002007_110 Hb_002007_110 Hb_005832_010--Hb_002007_110 Hb_001951_170 Hb_001951_170 Hb_005832_010--Hb_001951_170 Hb_005832_010--Hb_000172_340 Hb_012490_010 Hb_012490_010 Hb_002928_190--Hb_012490_010 Hb_005649_080 Hb_005649_080 Hb_002928_190--Hb_005649_080 Hb_020805_150 Hb_020805_150 Hb_002928_190--Hb_020805_150 Hb_008686_020 Hb_008686_020 Hb_002928_190--Hb_008686_020 Hb_003939_060 Hb_003939_060 Hb_002928_190--Hb_003939_060 Hb_002119_090 Hb_002119_090 Hb_004785_030--Hb_002119_090 Hb_000700_060 Hb_000700_060 Hb_004785_030--Hb_000700_060 Hb_005188_040 Hb_005188_040 Hb_004785_030--Hb_005188_040 Hb_044653_020 Hb_044653_020 Hb_004785_030--Hb_044653_020 Hb_004785_030--Hb_020805_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.51065 31.8932 11.7559 14.5686 11.4575 13.6516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.56417 5.6641 6.20361 16.1877 15.1724

CAGE analysis