Hb_005649_080

Information

Type -
Description -
Location Contig5649: 43420-46848
Sequence    

Annotation

kegg
ID rcu:RCOM_1025310
description hypothetical protein
nr
ID XP_012084828.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
swissprot
ID Q9S7I6
description LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=2 SV=1
trembl
ID A0A067JTQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19946 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lrr receptor-like serine threonine-protein kinase rpk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48973: 43239-47121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005649_080 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
2 Hb_002928_190 0.0623460755 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
3 Hb_001226_110 0.0638216325 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
4 Hb_170077_010 0.0695129266 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
5 Hb_020805_150 0.0725048387 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000358_220 0.0736100244 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
7 Hb_003939_060 0.0758819043 - - conserved hypothetical protein [Ricinus communis]
8 Hb_026198_060 0.0760005794 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
9 Hb_000367_020 0.0778337487 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
10 Hb_003929_210 0.080339699 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
11 Hb_022425_060 0.0804155849 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
12 Hb_003918_030 0.0807869034 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
13 Hb_001828_170 0.0815874585 - - PREDICTED: protein TPLATE [Jatropha curcas]
14 Hb_000347_300 0.0835169946 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
15 Hb_000110_350 0.0860111385 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
16 Hb_008686_020 0.086877567 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
17 Hb_012490_010 0.0873408897 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
18 Hb_008165_020 0.0877422872 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
19 Hb_000066_150 0.0891360242 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
20 Hb_009476_120 0.0892465963 - - Clathrin heavy chain 1 [Glycine soja]

Gene co-expression network

sample Hb_005649_080 Hb_005649_080 Hb_002928_190 Hb_002928_190 Hb_005649_080--Hb_002928_190 Hb_001226_110 Hb_001226_110 Hb_005649_080--Hb_001226_110 Hb_170077_010 Hb_170077_010 Hb_005649_080--Hb_170077_010 Hb_020805_150 Hb_020805_150 Hb_005649_080--Hb_020805_150 Hb_000358_220 Hb_000358_220 Hb_005649_080--Hb_000358_220 Hb_003939_060 Hb_003939_060 Hb_005649_080--Hb_003939_060 Hb_012490_010 Hb_012490_010 Hb_002928_190--Hb_012490_010 Hb_002928_190--Hb_020805_150 Hb_003604_050 Hb_003604_050 Hb_002928_190--Hb_003604_050 Hb_008686_020 Hb_008686_020 Hb_002928_190--Hb_008686_020 Hb_002928_190--Hb_003939_060 Hb_001103_090 Hb_001103_090 Hb_001226_110--Hb_001103_090 Hb_009476_120 Hb_009476_120 Hb_001226_110--Hb_009476_120 Hb_001226_110--Hb_000358_220 Hb_001226_110--Hb_170077_010 Hb_000358_100 Hb_000358_100 Hb_001226_110--Hb_000358_100 Hb_000110_350 Hb_000110_350 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_170077_010--Hb_000358_220 Hb_000996_020 Hb_000996_020 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020 Hb_022425_060 Hb_022425_060 Hb_020805_150--Hb_022425_060 Hb_020805_150--Hb_170077_010 Hb_003918_030 Hb_003918_030 Hb_020805_150--Hb_003918_030 Hb_020805_150--Hb_012490_010 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_003939_060--Hb_003929_210 Hb_009302_030 Hb_009302_030 Hb_003939_060--Hb_009302_030 Hb_003939_060--Hb_000110_350 Hb_003939_060--Hb_000996_020 Hb_001904_030 Hb_001904_030 Hb_003939_060--Hb_001904_030 Hb_002007_110 Hb_002007_110 Hb_003939_060--Hb_002007_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22602 8.64161 4.62273 6.03709 2.25488 3.55843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38487 1.50593 2.77279 4.15837 5.9111

CAGE analysis