Hb_008686_020

Information

Type -
Description -
Location Contig8686: 20492-30822
Sequence    

Annotation

kegg
ID rcu:RCOM_1387580
description hypothetical protein
nr
ID XP_012069994.1
description PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03412 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61063: 20453-37015 , PASA_asmbl_61064: 20453-37308 , PASA_asmbl_61065: 22520-37308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008686_020 0.0 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
2 Hb_002918_320 0.0613741866 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
3 Hb_012490_010 0.0614227137 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
4 Hb_001951_100 0.0659756989 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
5 Hb_002928_190 0.0662313875 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
6 Hb_004551_020 0.0684501666 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
7 Hb_000367_020 0.0751307006 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
8 Hb_004696_070 0.0759051134 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
9 Hb_021596_010 0.0774489729 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
10 Hb_003605_220 0.0856993948 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
11 Hb_005649_080 0.086877567 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
12 Hb_002248_120 0.0883667921 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
13 Hb_044653_020 0.0903523948 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
14 Hb_003047_020 0.0907966192 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_003939_060 0.0911262764 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001561_010 0.0923335979 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
17 Hb_000445_130 0.0925041031 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
18 Hb_000856_020 0.0927786951 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
19 Hb_005765_040 0.0929075006 - - transcription elongation factor s-II, putative [Ricinus communis]
20 Hb_020805_150 0.0931481349 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008686_020 Hb_008686_020 Hb_002918_320 Hb_002918_320 Hb_008686_020--Hb_002918_320 Hb_012490_010 Hb_012490_010 Hb_008686_020--Hb_012490_010 Hb_001951_100 Hb_001951_100 Hb_008686_020--Hb_001951_100 Hb_002928_190 Hb_002928_190 Hb_008686_020--Hb_002928_190 Hb_004551_020 Hb_004551_020 Hb_008686_020--Hb_004551_020 Hb_000367_020 Hb_000367_020 Hb_008686_020--Hb_000367_020 Hb_000413_250 Hb_000413_250 Hb_002918_320--Hb_000413_250 Hb_005765_040 Hb_005765_040 Hb_002918_320--Hb_005765_040 Hb_004696_070 Hb_004696_070 Hb_002918_320--Hb_004696_070 Hb_002918_320--Hb_001951_100 Hb_001561_010 Hb_001561_010 Hb_002918_320--Hb_001561_010 Hb_012490_010--Hb_004696_070 Hb_012490_010--Hb_002928_190 Hb_012490_010--Hb_004551_020 Hb_020805_150 Hb_020805_150 Hb_012490_010--Hb_020805_150 Hb_000170_100 Hb_000170_100 Hb_012490_010--Hb_000170_100 Hb_001951_100--Hb_000367_020 Hb_001951_100--Hb_004696_070 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360 Hb_005649_080 Hb_005649_080 Hb_002928_190--Hb_005649_080 Hb_002928_190--Hb_020805_150 Hb_003604_050 Hb_003604_050 Hb_002928_190--Hb_003604_050 Hb_003939_060 Hb_003939_060 Hb_002928_190--Hb_003939_060 Hb_000428_030 Hb_000428_030 Hb_004551_020--Hb_000428_030 Hb_002078_470 Hb_002078_470 Hb_004551_020--Hb_002078_470 Hb_007012_040 Hb_007012_040 Hb_004551_020--Hb_007012_040 Hb_000035_100 Hb_000035_100 Hb_004551_020--Hb_000035_100 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_000367_020--Hb_005649_080 Hb_000154_130 Hb_000154_130 Hb_000367_020--Hb_000154_130 Hb_001054_120 Hb_001054_120 Hb_000367_020--Hb_001054_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.35803 45.2994 16.1505 18.1808 10.566 13.1375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.53765 6.28007 9.16239 15.6642 27.5298

CAGE analysis