Hb_000445_130

Information

Type transcription factor
Description TF Family: C3H
Location Contig445: 151883-164155
Sequence    

Annotation

kegg
ID rcu:RCOM_0561570
description protein with unknown function
nr
ID KDP32867.1
description hypothetical protein JCGZ_12159 [Jatropha curcas]
swissprot
ID Q3ED78
description Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana GN=At1g21570 PE=1 SV=1
trembl
ID A0A067K9S4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12159 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42888: 155322-155608 , PASA_asmbl_42892: 156809-158098 , PASA_asmbl_42893: 160015-161831 , PASA_asmbl_42895: 162960-164643
cDNA
(Sanger)
(ID:Location)		 014_B09.ab1: 163011-163348 , 027_P06.ab1: 162988-164238

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_130 0.0 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
2 Hb_000154_130 0.0716250851 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
3 Hb_007012_040 0.0784117241 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
4 Hb_001951_100 0.0824001319 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
5 Hb_015183_080 0.0868955415 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
6 Hb_003124_270 0.0877843718 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
7 Hb_000367_020 0.0920030855 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
8 Hb_008686_020 0.0925041031 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
9 Hb_000413_250 0.0933912904 - - Cysteine-rich RLK 29 [Theobroma cacao]
10 Hb_002078_470 0.0954152381 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
11 Hb_000200_110 0.0971021572 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
12 Hb_002918_320 0.0980002367 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
13 Hb_000492_080 0.0995064035 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
14 Hb_001124_050 0.0997459339 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
15 Hb_001054_120 0.099817449 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
16 Hb_000928_090 0.1000974258 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
17 Hb_004551_020 0.1001715417 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
18 Hb_001477_020 0.100478676 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
19 Hb_014006_010 0.1013532093 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
20 Hb_171554_040 0.1035855409 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]

Gene co-expression network

sample Hb_000445_130 Hb_000445_130 Hb_000154_130 Hb_000154_130 Hb_000445_130--Hb_000154_130 Hb_007012_040 Hb_007012_040 Hb_000445_130--Hb_007012_040 Hb_001951_100 Hb_001951_100 Hb_000445_130--Hb_001951_100 Hb_015183_080 Hb_015183_080 Hb_000445_130--Hb_015183_080 Hb_003124_270 Hb_003124_270 Hb_000445_130--Hb_003124_270 Hb_000367_020 Hb_000367_020 Hb_000445_130--Hb_000367_020 Hb_000154_130--Hb_007012_040 Hb_000154_130--Hb_000367_020 Hb_011021_050 Hb_011021_050 Hb_000154_130--Hb_011021_050 Hb_000154_130--Hb_003124_270 Hb_000154_130--Hb_001951_100 Hb_007012_040--Hb_003124_270 Hb_004884_090 Hb_004884_090 Hb_007012_040--Hb_004884_090 Hb_171554_040 Hb_171554_040 Hb_007012_040--Hb_171554_040 Hb_004551_020 Hb_004551_020 Hb_007012_040--Hb_004551_020 Hb_008686_020 Hb_008686_020 Hb_001951_100--Hb_008686_020 Hb_001951_100--Hb_000367_020 Hb_004696_070 Hb_004696_070 Hb_001951_100--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_001951_100--Hb_012490_010 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360 Hb_002521_020 Hb_002521_020 Hb_015183_080--Hb_002521_020 Hb_003014_030 Hb_003014_030 Hb_015183_080--Hb_003014_030 Hb_001054_120 Hb_001054_120 Hb_015183_080--Hb_001054_120 Hb_015183_080--Hb_000367_020 Hb_001124_050 Hb_001124_050 Hb_015183_080--Hb_001124_050 Hb_000844_050 Hb_000844_050 Hb_003124_270--Hb_000844_050 Hb_003124_270--Hb_004884_090 Hb_005181_050 Hb_005181_050 Hb_003124_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_000367_020--Hb_008686_020 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_000367_020--Hb_001054_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0685 6.43664 2.04348 3.01728 1.4111 2.03472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.940694 0.795534 1.31425 3.64124 5.90833

CAGE analysis