Hb_003014_030

Information

Type -
Description -
Location Contig3014: 104190-113390
Sequence    

Annotation

kegg
ID rcu:RCOM_0855190
description hypothetical protein
nr
ID XP_012083095.1
description PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]
swissprot
ID A8C750
description Thyroid adenoma-associated protein homolog OS=Canis familiaris GN=THADA PE=2 SV=1
trembl
ID B9RUP4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0855190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31739: 105844-107990 , PASA_asmbl_31741: 109453-110375 , PASA_asmbl_31745: 112593-113042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003014_030 0.0 - - PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]
2 Hb_015183_080 0.0859519974 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_029243_020 0.086019226 - - ENTH/VHS/GAT family protein [Theobroma cacao]
4 Hb_004705_020 0.0929156618 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
5 Hb_009486_090 0.0948254029 - - RNA binding protein, putative [Ricinus communis]
6 Hb_001124_050 0.0949163934 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
7 Hb_000083_270 0.0977972232 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
8 Hb_001951_170 0.0997713738 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_003047_020 0.101218479 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
10 Hb_002521_020 0.1014373324 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
11 Hb_000261_150 0.1015119709 - - conserved hypothetical protein [Ricinus communis]
12 Hb_021596_010 0.1018144524 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
13 Hb_014497_020 0.1018443522 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
14 Hb_003211_040 0.1018964901 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
15 Hb_000836_020 0.1023646122 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
16 Hb_000574_530 0.105168056 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
17 Hb_000661_260 0.1053705328 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
18 Hb_001699_280 0.1054103929 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
19 Hb_009486_170 0.1054733742 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
20 Hb_001662_180 0.105521453 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]

Gene co-expression network

sample Hb_003014_030 Hb_003014_030 Hb_015183_080 Hb_015183_080 Hb_003014_030--Hb_015183_080 Hb_029243_020 Hb_029243_020 Hb_003014_030--Hb_029243_020 Hb_004705_020 Hb_004705_020 Hb_003014_030--Hb_004705_020 Hb_009486_090 Hb_009486_090 Hb_003014_030--Hb_009486_090 Hb_001124_050 Hb_001124_050 Hb_003014_030--Hb_001124_050 Hb_000083_270 Hb_000083_270 Hb_003014_030--Hb_000083_270 Hb_002521_020 Hb_002521_020 Hb_015183_080--Hb_002521_020 Hb_000445_130 Hb_000445_130 Hb_015183_080--Hb_000445_130 Hb_001054_120 Hb_001054_120 Hb_015183_080--Hb_001054_120 Hb_000367_020 Hb_000367_020 Hb_015183_080--Hb_000367_020 Hb_015183_080--Hb_001124_050 Hb_029243_020--Hb_004705_020 Hb_000009_410 Hb_000009_410 Hb_029243_020--Hb_000009_410 Hb_004204_010 Hb_004204_010 Hb_029243_020--Hb_004204_010 Hb_000656_060 Hb_000656_060 Hb_029243_020--Hb_000656_060 Hb_003047_020 Hb_003047_020 Hb_029243_020--Hb_003047_020 Hb_001628_070 Hb_001628_070 Hb_004705_020--Hb_001628_070 Hb_006531_020 Hb_006531_020 Hb_004705_020--Hb_006531_020 Hb_000017_220 Hb_000017_220 Hb_004705_020--Hb_000017_220 Hb_000024_040 Hb_000024_040 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_005977_070 Hb_005977_070 Hb_004705_020--Hb_005977_070 Hb_006031_010 Hb_006031_010 Hb_009486_090--Hb_006031_010 Hb_001377_100 Hb_001377_100 Hb_009486_090--Hb_001377_100 Hb_009486_090--Hb_001124_050 Hb_000196_060 Hb_000196_060 Hb_009486_090--Hb_000196_060 Hb_001951_170 Hb_001951_170 Hb_009486_090--Hb_001951_170 Hb_009486_170 Hb_009486_170 Hb_009486_090--Hb_009486_170 Hb_001124_050--Hb_009486_170 Hb_001124_050--Hb_002521_020 Hb_001124_050--Hb_006031_010 Hb_001133_030 Hb_001133_030 Hb_001124_050--Hb_001133_030 Hb_001124_050--Hb_001951_170 Hb_001699_280 Hb_001699_280 Hb_000083_270--Hb_001699_280 Hb_000631_110 Hb_000631_110 Hb_000083_270--Hb_000631_110 Hb_000340_490 Hb_000340_490 Hb_000083_270--Hb_000340_490 Hb_002005_080 Hb_002005_080 Hb_000083_270--Hb_002005_080 Hb_000083_270--Hb_004705_020 Hb_000083_270--Hb_001628_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.20279 11.3849 2.25272 4.03839 2.79495 4.38296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53453 1.70134 4.18205 6.87238 7.79808

CAGE analysis