Hb_000196_060

Information

Type -
Description -
Location Contig196: 114933-117882
Sequence    

Annotation

kegg
ID rcu:RCOM_1333200
description oligopeptide transporter, putative
nr
ID XP_012075471.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
swissprot
ID Q0WP01
description Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana GN=NPF5.10 PE=2 SV=1
trembl
ID A0A067KS40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10942 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19655: 114838-116301 , PASA_asmbl_19656: 116621-117290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000196_060 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
2 Hb_009486_090 0.061512845 - - RNA binding protein, putative [Ricinus communis]
3 Hb_002391_050 0.0668093448 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
4 Hb_001377_100 0.0695688047 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
5 Hb_000925_090 0.072326729 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
6 Hb_006031_010 0.075648637 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
7 Hb_011174_020 0.0770320429 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
8 Hb_001133_030 0.0773278619 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
9 Hb_000568_050 0.0776926104 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
10 Hb_000059_230 0.0798874919 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
11 Hb_001124_050 0.0807734502 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
12 Hb_002357_070 0.0829443765 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
13 Hb_009486_170 0.083329754 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
14 Hb_003849_280 0.0845659466 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
15 Hb_001935_160 0.0845671558 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
16 Hb_012055_110 0.0869980545 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
17 Hb_007245_020 0.0870652158 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
18 Hb_012244_020 0.087097945 - - calpain, putative [Ricinus communis]
19 Hb_114151_020 0.0875776307 - - glucan water dikinase 2 [Manihot esculenta]
20 Hb_123531_010 0.0890889855 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000196_060 Hb_000196_060 Hb_009486_090 Hb_009486_090 Hb_000196_060--Hb_009486_090 Hb_002391_050 Hb_002391_050 Hb_000196_060--Hb_002391_050 Hb_001377_100 Hb_001377_100 Hb_000196_060--Hb_001377_100 Hb_000925_090 Hb_000925_090 Hb_000196_060--Hb_000925_090 Hb_006031_010 Hb_006031_010 Hb_000196_060--Hb_006031_010 Hb_011174_020 Hb_011174_020 Hb_000196_060--Hb_011174_020 Hb_009486_090--Hb_006031_010 Hb_009486_090--Hb_001377_100 Hb_001124_050 Hb_001124_050 Hb_009486_090--Hb_001124_050 Hb_001951_170 Hb_001951_170 Hb_009486_090--Hb_001951_170 Hb_009486_170 Hb_009486_170 Hb_009486_090--Hb_009486_170 Hb_001008_050 Hb_001008_050 Hb_002391_050--Hb_001008_050 Hb_015978_100 Hb_015978_100 Hb_002391_050--Hb_015978_100 Hb_001935_160 Hb_001935_160 Hb_002391_050--Hb_001935_160 Hb_002391_050--Hb_000925_090 Hb_003124_100 Hb_003124_100 Hb_002391_050--Hb_003124_100 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230 Hb_001133_030 Hb_001133_030 Hb_000925_090--Hb_001133_030 Hb_000925_090--Hb_012244_020 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_002007_110 Hb_002007_110 Hb_006031_010--Hb_002007_110 Hb_006031_010--Hb_012244_020 Hb_006031_010--Hb_001951_170 Hb_123531_010 Hb_123531_010 Hb_006031_010--Hb_123531_010 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_001925_060 Hb_001925_060 Hb_011174_020--Hb_001925_060 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72853 7.6237 3.89376 5.33738 3.33599 4.5812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66237 2.55735 2.54819 6.95707 9.38176

CAGE analysis