Hb_015978_100

Information

Type -
Description -
Location Contig15978: 45324-54197
Sequence    

Annotation

kegg
ID rcu:RCOM_1347370
description ATP binding protein, putative
nr
ID XP_012082881.1
description PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
swissprot
ID O04716
description DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1 SV=2
trembl
ID A0A067JZR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14019 PE=3 SV=1
Gene Ontology
ID GO:0003684
description dna mismatch repair protein msh6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14222: 45407-46811 , PASA_asmbl_14223: 46155-46800 , PASA_asmbl_14224: 47521-48367 , PASA_asmbl_14225: 48383-49064 , PASA_asmbl_14226: 49286-50782 , PASA_asmbl_14228: 50847-53182 , PASA_asmbl_14230: 53686-53840 , PASA_asmbl_14232: 54947-55815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_100 0.0 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
2 Hb_000183_050 0.0681881927 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
3 Hb_000679_270 0.0727183442 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
4 Hb_001935_160 0.0784613476 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
5 Hb_002391_050 0.080039641 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
6 Hb_005563_060 0.0823800995 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
7 Hb_000252_050 0.082544581 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
8 Hb_000086_690 0.0827520468 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
9 Hb_133702_020 0.0838607137 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_007994_010 0.084154199 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
11 Hb_003805_040 0.0873231147 - - Sacsin [Glycine soja]
12 Hb_006839_010 0.0875259765 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
13 Hb_001377_100 0.0904253887 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
14 Hb_000086_440 0.0906152868 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
15 Hb_000059_230 0.0906303845 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
16 Hb_012760_100 0.090765267 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
17 Hb_000062_020 0.0925767786 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_000665_230 0.0927660504 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
19 Hb_009486_170 0.0944089654 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
20 Hb_000331_560 0.0947177291 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]

Gene co-expression network

sample Hb_015978_100 Hb_015978_100 Hb_000183_050 Hb_000183_050 Hb_015978_100--Hb_000183_050 Hb_000679_270 Hb_000679_270 Hb_015978_100--Hb_000679_270 Hb_001935_160 Hb_001935_160 Hb_015978_100--Hb_001935_160 Hb_002391_050 Hb_002391_050 Hb_015978_100--Hb_002391_050 Hb_005563_060 Hb_005563_060 Hb_015978_100--Hb_005563_060 Hb_000252_050 Hb_000252_050 Hb_015978_100--Hb_000252_050 Hb_000086_690 Hb_000086_690 Hb_000183_050--Hb_000086_690 Hb_011202_020 Hb_011202_020 Hb_000183_050--Hb_011202_020 Hb_003417_010 Hb_003417_010 Hb_000183_050--Hb_003417_010 Hb_001235_230 Hb_001235_230 Hb_000183_050--Hb_001235_230 Hb_000035_410 Hb_000035_410 Hb_000183_050--Hb_000035_410 Hb_000890_060 Hb_000890_060 Hb_000679_270--Hb_000890_060 Hb_000789_250 Hb_000789_250 Hb_000679_270--Hb_000789_250 Hb_000086_440 Hb_000086_440 Hb_000679_270--Hb_000086_440 Hb_132840_110 Hb_132840_110 Hb_000679_270--Hb_132840_110 Hb_001635_120 Hb_001635_120 Hb_000679_270--Hb_001635_120 Hb_000941_030 Hb_000941_030 Hb_001935_160--Hb_000941_030 Hb_012055_110 Hb_012055_110 Hb_001935_160--Hb_012055_110 Hb_002475_040 Hb_002475_040 Hb_001935_160--Hb_002475_040 Hb_000027_050 Hb_000027_050 Hb_001935_160--Hb_000027_050 Hb_000066_150 Hb_000066_150 Hb_001935_160--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_001935_160--Hb_000879_040 Hb_000196_060 Hb_000196_060 Hb_002391_050--Hb_000196_060 Hb_001008_050 Hb_001008_050 Hb_002391_050--Hb_001008_050 Hb_002391_050--Hb_001935_160 Hb_000925_090 Hb_000925_090 Hb_002391_050--Hb_000925_090 Hb_003124_100 Hb_003124_100 Hb_002391_050--Hb_003124_100 Hb_000037_220 Hb_000037_220 Hb_005563_060--Hb_000037_220 Hb_000003_100 Hb_000003_100 Hb_005563_060--Hb_000003_100 Hb_001377_350 Hb_001377_350 Hb_005563_060--Hb_001377_350 Hb_003216_090 Hb_003216_090 Hb_005563_060--Hb_003216_090 Hb_000665_230 Hb_000665_230 Hb_005563_060--Hb_000665_230 Hb_012092_060 Hb_012092_060 Hb_005563_060--Hb_012092_060 Hb_021374_010 Hb_021374_010 Hb_000252_050--Hb_021374_010 Hb_000227_220 Hb_000227_220 Hb_000252_050--Hb_000227_220 Hb_011231_020 Hb_011231_020 Hb_000252_050--Hb_011231_020 Hb_000252_050--Hb_000027_050 Hb_012760_100 Hb_012760_100 Hb_000252_050--Hb_012760_100 Hb_003943_010 Hb_003943_010 Hb_000252_050--Hb_003943_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.84957 5.31283 2.64555 5.1172 3.60055 4.82182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15624 1.61647 3.09572 4.36906 6.97219

CAGE analysis