Hb_021374_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig21374: 21393-23152
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23630g
description POPTRDRAFT_725098; no apical meristem family protein
nr
ID XP_011024336.1
description PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
swissprot
ID Q84K00
description NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2
trembl
ID A9PB02
description No apical meristem family protein OS=Populus trichocarpa GN=POPTR_0010s23630g PE=2 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 74-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22084: 21400-21771 , PASA_asmbl_22085: 22205-22478 , PASA_asmbl_22086: 22521-34176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021374_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
2 Hb_004020_040 0.0579100798 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
3 Hb_000227_220 0.0651084075 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
4 Hb_000170_090 0.0655086726 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
5 Hb_003943_010 0.0671217449 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001377_310 0.0699176652 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
7 Hb_001089_030 0.0701892071 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
8 Hb_000252_050 0.0708286047 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
9 Hb_000976_140 0.0710825044 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
10 Hb_001856_180 0.0725805415 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
11 Hb_003517_040 0.0737624581 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
12 Hb_001922_150 0.0745948253 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
13 Hb_002205_030 0.0749345049 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
14 Hb_004452_110 0.0759007044 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
15 Hb_006520_040 0.0759240514 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
16 Hb_011231_020 0.0771627146 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
17 Hb_000189_600 0.0772687986 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
18 Hb_005730_040 0.0773136112 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
19 Hb_007062_030 0.0783724763 - - hypothetical protein VITISV_039033 [Vitis vinifera]
20 Hb_003734_010 0.0785142499 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]

Gene co-expression network

sample Hb_021374_010 Hb_021374_010 Hb_004020_040 Hb_004020_040 Hb_021374_010--Hb_004020_040 Hb_000227_220 Hb_000227_220 Hb_021374_010--Hb_000227_220 Hb_000170_090 Hb_000170_090 Hb_021374_010--Hb_000170_090 Hb_003943_010 Hb_003943_010 Hb_021374_010--Hb_003943_010 Hb_001377_310 Hb_001377_310 Hb_021374_010--Hb_001377_310 Hb_001089_030 Hb_001089_030 Hb_021374_010--Hb_001089_030 Hb_000035_110 Hb_000035_110 Hb_004020_040--Hb_000035_110 Hb_001040_100 Hb_001040_100 Hb_004020_040--Hb_001040_100 Hb_004020_040--Hb_000227_220 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150 Hb_009976_020 Hb_009976_020 Hb_000227_220--Hb_009976_020 Hb_001814_030 Hb_001814_030 Hb_000227_220--Hb_001814_030 Hb_000710_040 Hb_000710_040 Hb_000227_220--Hb_000710_040 Hb_000227_220--Hb_003943_010 Hb_000227_220--Hb_001089_030 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_000170_090--Hb_001377_310 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_013399_020 Hb_013399_020 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160 Hb_001377_160 Hb_001377_160 Hb_003943_010--Hb_001377_160 Hb_001946_340 Hb_001946_340 Hb_003943_010--Hb_001946_340 Hb_000398_080 Hb_000398_080 Hb_003943_010--Hb_000398_080 Hb_000879_040 Hb_000879_040 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010 Hb_001377_310--Hb_000035_110 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_001089_030--Hb_000710_040 Hb_007590_020 Hb_007590_020 Hb_001089_030--Hb_007590_020 Hb_001720_040 Hb_001720_040 Hb_001089_030--Hb_001720_040 Hb_001089_030--Hb_004020_040 Hb_004837_180 Hb_004837_180 Hb_001089_030--Hb_004837_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9478 20.5526 19.577 20.6535 13.1376 24.0046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1977 13.8007 8.76314 19.633 21.8956

CAGE analysis