Hb_003943_010

Information

Type -
Description -
Location Contig3943: 13690-20315
Sequence    

Annotation

kegg
ID rcu:RCOM_0170000
description hypothetical protein
nr
ID XP_002532943.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8R149
description BUD13 homolog OS=Mus musculus GN=Bud13 PE=1 SV=1
trembl
ID B9T3X4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0170000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39472: 13693-20234 , PASA_asmbl_39473: 16404-16768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003943_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001377_160 0.0493825634 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
3 Hb_001946_340 0.0587997867 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
4 Hb_000227_220 0.0603270179 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
5 Hb_000398_080 0.0627797563 - - tip120, putative [Ricinus communis]
6 Hb_000879_040 0.0636280871 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
7 Hb_159558_010 0.0637879275 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
8 Hb_011849_040 0.064188864 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_004143_100 0.0648769658 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000027_050 0.0654659108 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
11 Hb_003120_080 0.066844866 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
12 Hb_021374_010 0.0671217449 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
13 Hb_000170_150 0.0678021978 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
14 Hb_004109_230 0.0680602664 - - heat shock protein binding protein, putative [Ricinus communis]
15 Hb_000011_100 0.0699658428 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
16 Hb_000614_210 0.0705686798 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
17 Hb_005542_140 0.0712426486 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
18 Hb_001814_030 0.0719328143 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
19 Hb_000139_130 0.0719629635 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
20 Hb_002205_250 0.0719752684 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003943_010 Hb_003943_010 Hb_001377_160 Hb_001377_160 Hb_003943_010--Hb_001377_160 Hb_001946_340 Hb_001946_340 Hb_003943_010--Hb_001946_340 Hb_000227_220 Hb_000227_220 Hb_003943_010--Hb_000227_220 Hb_000398_080 Hb_000398_080 Hb_003943_010--Hb_000398_080 Hb_000879_040 Hb_000879_040 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010 Hb_004668_060 Hb_004668_060 Hb_001377_160--Hb_004668_060 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_001377_160--Hb_000398_080 Hb_003498_120 Hb_003498_120 Hb_001377_160--Hb_003498_120 Hb_000139_130 Hb_000139_130 Hb_001377_160--Hb_000139_130 Hb_007123_030 Hb_007123_030 Hb_001946_340--Hb_007123_030 Hb_007747_040 Hb_007747_040 Hb_001946_340--Hb_007747_040 Hb_004935_030 Hb_004935_030 Hb_001946_340--Hb_004935_030 Hb_001767_140 Hb_001767_140 Hb_001946_340--Hb_001767_140 Hb_001946_340--Hb_001377_160 Hb_009976_020 Hb_009976_020 Hb_000227_220--Hb_009976_020 Hb_001814_030 Hb_001814_030 Hb_000227_220--Hb_001814_030 Hb_000710_040 Hb_000710_040 Hb_000227_220--Hb_000710_040 Hb_001089_030 Hb_001089_030 Hb_000227_220--Hb_001089_030 Hb_004020_040 Hb_004020_040 Hb_000227_220--Hb_004020_040 Hb_007657_020 Hb_007657_020 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000603_030 Hb_000603_030 Hb_000398_080--Hb_000603_030 Hb_004267_040 Hb_004267_040 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130 Hb_001318_070 Hb_001318_070 Hb_000879_040--Hb_001318_070 Hb_000243_210 Hb_000243_210 Hb_000879_040--Hb_000243_210 Hb_012055_110 Hb_012055_110 Hb_000879_040--Hb_012055_110 Hb_000027_050 Hb_000027_050 Hb_000879_040--Hb_000027_050 Hb_000099_040 Hb_000099_040 Hb_000879_040--Hb_000099_040 Hb_001430_080 Hb_001430_080 Hb_000879_040--Hb_001430_080 Hb_000614_210 Hb_000614_210 Hb_159558_010--Hb_000614_210 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_159558_010--Hb_001814_030 Hb_000174_060 Hb_000174_060 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_009615_170 Hb_009615_170 Hb_159558_010--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.989 22.5579 13.607 16.8809 14.5988 18.0845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8486 9.57672 8.67306 17.5974 16.4883

CAGE analysis