Hb_004668_060

Information

Type -
Description -
Location Contig4668: 50832-55569
Sequence    

Annotation

kegg
ID rcu:RCOM_0836420
description adenosine diphosphatase, putative (EC:3.6.1.5)
nr
ID XP_012067642.1
description PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
swissprot
ID O80612
description Probable apyrase 6 OS=Arabidopsis thaliana GN=APY6 PE=2 SV=2
trembl
ID A0A067L9Q3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15607 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable apyrase 6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44102: 50935-51100 , PASA_asmbl_44103: 51208-51345 , PASA_asmbl_44104: 51400-55560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004668_060 0.0 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
2 Hb_001377_160 0.0506762233 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
3 Hb_007508_080 0.0533350754 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
4 Hb_001033_050 0.0642573487 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
5 Hb_000139_130 0.0655915228 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
6 Hb_005503_040 0.0729962254 - - PREDICTED: AMP deaminase [Jatropha curcas]
7 Hb_000046_070 0.0764291599 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_154114_010 0.0783457115 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
9 Hb_004109_230 0.0789151756 - - heat shock protein binding protein, putative [Ricinus communis]
10 Hb_003120_080 0.0807312491 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
11 Hb_003943_010 0.0824865027 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000505_020 0.0857772726 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
13 Hb_001318_020 0.0859939054 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
14 Hb_003498_120 0.0866749461 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
15 Hb_000011_190 0.0871641894 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
16 Hb_000617_100 0.0886169525 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
17 Hb_001454_370 0.0887515229 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
18 Hb_001860_040 0.0896733781 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
19 Hb_002174_020 0.0900387252 - - ring finger protein, putative [Ricinus communis]
20 Hb_008103_020 0.0900605394 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]

Gene co-expression network

sample Hb_004668_060 Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_004668_060--Hb_001377_160 Hb_007508_080 Hb_007508_080 Hb_004668_060--Hb_007508_080 Hb_001033_050 Hb_001033_050 Hb_004668_060--Hb_001033_050 Hb_000139_130 Hb_000139_130 Hb_004668_060--Hb_000139_130 Hb_005503_040 Hb_005503_040 Hb_004668_060--Hb_005503_040 Hb_000046_070 Hb_000046_070 Hb_004668_060--Hb_000046_070 Hb_003943_010 Hb_003943_010 Hb_001377_160--Hb_003943_010 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_000398_080 Hb_000398_080 Hb_001377_160--Hb_000398_080 Hb_003498_120 Hb_003498_120 Hb_001377_160--Hb_003498_120 Hb_001377_160--Hb_000139_130 Hb_008103_020 Hb_008103_020 Hb_007508_080--Hb_008103_020 Hb_007508_080--Hb_000139_130 Hb_007508_080--Hb_001377_160 Hb_004109_230 Hb_004109_230 Hb_007508_080--Hb_004109_230 Hb_007508_080--Hb_005503_040 Hb_004129_070 Hb_004129_070 Hb_001033_050--Hb_004129_070 Hb_001033_050--Hb_000139_130 Hb_001135_120 Hb_001135_120 Hb_001033_050--Hb_001135_120 Hb_008253_020 Hb_008253_020 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_000139_130--Hb_004109_230 Hb_061878_010 Hb_061878_010 Hb_000139_130--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_000139_130--Hb_004109_370 Hb_080313_010 Hb_080313_010 Hb_005503_040--Hb_080313_010 Hb_000683_070 Hb_000683_070 Hb_005503_040--Hb_000683_070 Hb_000617_100 Hb_000617_100 Hb_005503_040--Hb_000617_100 Hb_100215_010 Hb_100215_010 Hb_005503_040--Hb_100215_010 Hb_002081_120 Hb_002081_120 Hb_000046_070--Hb_002081_120 Hb_001147_110 Hb_001147_110 Hb_000046_070--Hb_001147_110 Hb_000879_160 Hb_000879_160 Hb_000046_070--Hb_000879_160 Hb_000046_070--Hb_001033_050 Hb_000780_170 Hb_000780_170 Hb_000046_070--Hb_000780_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0744 18.4978 9.91494 15.7709 15.8778 15.969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2273 5.30986 6.29841 13.3248 9.30535

CAGE analysis