Hb_000683_070

Information

Type -
Description -
Location Contig683: 73140-75702
Sequence    

Annotation

kegg
ID rcu:RCOM_0811570
description d-3-phosphoglycerate dehydrogenase, putative (EC:1.1.1.95)
nr
ID XP_002518687.1
description d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
swissprot
ID O49485
description D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=PGDH1 PE=1 SV=1
trembl
ID B9RYA3
description D-3-phosphoglycerate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0811570 PE=3 SV=1
Gene Ontology
ID GO:0016597
description d-3-phosphoglycerate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000683_070 0.0 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
2 Hb_005503_040 0.0659917693 - - PREDICTED: AMP deaminase [Jatropha curcas]
3 Hb_000617_100 0.0661910746 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
4 Hb_021409_040 0.0809173868 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
5 Hb_000366_120 0.0809219798 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
6 Hb_001369_130 0.0810577328 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
7 Hb_000982_060 0.081263896 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
8 Hb_014497_050 0.0854067917 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
9 Hb_011609_140 0.0857582216 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
10 Hb_000120_170 0.0872943393 - - selenoprotein [Populus trichocarpa]
11 Hb_000975_040 0.088341625 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
12 Hb_000120_430 0.0898835388 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
13 Hb_007576_110 0.0908248056 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
14 Hb_001541_230 0.0911028222 - - unnamed protein product [Vitis vinifera]
15 Hb_003680_150 0.0913964154 - - srpk, putative [Ricinus communis]
16 Hb_003549_150 0.0915371248 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
17 Hb_000484_030 0.0916155223 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
18 Hb_001195_560 0.0921035575 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
19 Hb_000958_140 0.09226745 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
20 Hb_002828_020 0.0924274356 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000683_070 Hb_000683_070 Hb_005503_040 Hb_005503_040 Hb_000683_070--Hb_005503_040 Hb_000617_100 Hb_000617_100 Hb_000683_070--Hb_000617_100 Hb_021409_040 Hb_021409_040 Hb_000683_070--Hb_021409_040 Hb_000366_120 Hb_000366_120 Hb_000683_070--Hb_000366_120 Hb_001369_130 Hb_001369_130 Hb_000683_070--Hb_001369_130 Hb_000982_060 Hb_000982_060 Hb_000683_070--Hb_000982_060 Hb_080313_010 Hb_080313_010 Hb_005503_040--Hb_080313_010 Hb_004668_060 Hb_004668_060 Hb_005503_040--Hb_004668_060 Hb_005503_040--Hb_000617_100 Hb_007508_080 Hb_007508_080 Hb_005503_040--Hb_007508_080 Hb_100215_010 Hb_100215_010 Hb_005503_040--Hb_100215_010 Hb_007576_110 Hb_007576_110 Hb_000617_100--Hb_007576_110 Hb_003549_150 Hb_003549_150 Hb_000617_100--Hb_003549_150 Hb_014361_070 Hb_014361_070 Hb_000617_100--Hb_014361_070 Hb_001195_560 Hb_001195_560 Hb_000617_100--Hb_001195_560 Hb_001051_080 Hb_001051_080 Hb_000617_100--Hb_001051_080 Hb_021409_040--Hb_000366_120 Hb_014497_050 Hb_014497_050 Hb_021409_040--Hb_014497_050 Hb_001409_020 Hb_001409_020 Hb_021409_040--Hb_001409_020 Hb_006634_070 Hb_006634_070 Hb_021409_040--Hb_006634_070 Hb_000958_140 Hb_000958_140 Hb_021409_040--Hb_000958_140 Hb_022115_020 Hb_022115_020 Hb_021409_040--Hb_022115_020 Hb_000366_120--Hb_007576_110 Hb_004195_200 Hb_004195_200 Hb_000366_120--Hb_004195_200 Hb_000366_120--Hb_014497_050 Hb_000366_120--Hb_001409_020 Hb_000789_310 Hb_000789_310 Hb_000366_120--Hb_000789_310 Hb_000975_040 Hb_000975_040 Hb_001369_130--Hb_000975_040 Hb_012395_140 Hb_012395_140 Hb_001369_130--Hb_012395_140 Hb_001369_130--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001369_130--Hb_000462_060 Hb_000789_250 Hb_000789_250 Hb_001369_130--Hb_000789_250 Hb_004267_040 Hb_004267_040 Hb_001369_130--Hb_004267_040 Hb_135831_010 Hb_135831_010 Hb_000982_060--Hb_135831_010 Hb_000000_270 Hb_000000_270 Hb_000982_060--Hb_000000_270 Hb_000442_150 Hb_000442_150 Hb_000982_060--Hb_000442_150 Hb_003893_030 Hb_003893_030 Hb_000982_060--Hb_003893_030 Hb_001135_130 Hb_001135_130 Hb_000982_060--Hb_001135_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.7713 48.3039 40.1609 59.9356 57.3844 45.5666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.4255 29.6759 34.7524 48.1254 30.3101

CAGE analysis