Hb_135831_010

Information

Type -
Description -
Location Contig135831: 75-746
Sequence    

Annotation

kegg
ID sot:102582311
description 60S ribosomal export protein NMD3-like
nr
ID KDP32449.1
description hypothetical protein JCGZ_13374 [Jatropha curcas]
swissprot
ID Q55BF2
description 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1
trembl
ID A0A067KKV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13374 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135831_010 0.0 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
2 Hb_000982_060 0.073694732 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
3 Hb_000120_170 0.0854660082 - - selenoprotein [Populus trichocarpa]
4 Hb_003549_150 0.0890563712 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
5 Hb_002876_320 0.0891444781 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
6 Hb_007416_300 0.0908500646 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
7 Hb_000009_400 0.0915964736 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
8 Hb_033642_030 0.0925817967 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
9 Hb_001195_560 0.0937702787 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
10 Hb_000617_100 0.0938625086 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
11 Hb_000146_050 0.0942931744 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
12 Hb_021409_040 0.0953296714 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
13 Hb_000366_120 0.0968209452 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
14 Hb_001135_130 0.0994435331 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
15 Hb_000522_170 0.0995155103 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
16 Hb_000309_040 0.1010784008 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
17 Hb_010485_020 0.1013621856 - - PREDICTED: thaumatin-like protein 1b isoform X1 [Jatropha curcas]
18 Hb_000566_200 0.1016466159 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
19 Hb_000656_250 0.1017214881 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
20 Hb_000915_180 0.1021441124 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_135831_010 Hb_135831_010 Hb_000982_060 Hb_000982_060 Hb_135831_010--Hb_000982_060 Hb_000120_170 Hb_000120_170 Hb_135831_010--Hb_000120_170 Hb_003549_150 Hb_003549_150 Hb_135831_010--Hb_003549_150 Hb_002876_320 Hb_002876_320 Hb_135831_010--Hb_002876_320 Hb_007416_300 Hb_007416_300 Hb_135831_010--Hb_007416_300 Hb_000009_400 Hb_000009_400 Hb_135831_010--Hb_000009_400 Hb_000000_270 Hb_000000_270 Hb_000982_060--Hb_000000_270 Hb_000442_150 Hb_000442_150 Hb_000982_060--Hb_000442_150 Hb_003893_030 Hb_003893_030 Hb_000982_060--Hb_003893_030 Hb_001135_130 Hb_001135_130 Hb_000982_060--Hb_001135_130 Hb_000683_070 Hb_000683_070 Hb_000982_060--Hb_000683_070 Hb_000120_170--Hb_003549_150 Hb_013738_020 Hb_013738_020 Hb_000120_170--Hb_013738_020 Hb_000076_160 Hb_000076_160 Hb_000120_170--Hb_000076_160 Hb_000227_090 Hb_000227_090 Hb_000120_170--Hb_000227_090 Hb_000928_220 Hb_000928_220 Hb_000120_170--Hb_000928_220 Hb_000120_170--Hb_000009_400 Hb_003549_150--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003549_150--Hb_010381_090 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_001051_080 Hb_001051_080 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040 Hb_002398_030 Hb_002398_030 Hb_002876_320--Hb_002398_030 Hb_000008_220 Hb_000008_220 Hb_002876_320--Hb_000008_220 Hb_008120_030 Hb_008120_030 Hb_002876_320--Hb_008120_030 Hb_002876_320--Hb_000009_400 Hb_033642_030 Hb_033642_030 Hb_002876_320--Hb_033642_030 Hb_000445_050 Hb_000445_050 Hb_002876_320--Hb_000445_050 Hb_007416_300--Hb_010381_090 Hb_007416_300--Hb_001051_080 Hb_002872_030 Hb_002872_030 Hb_007416_300--Hb_002872_030 Hb_007416_300--Hb_033642_030 Hb_008453_140 Hb_008453_140 Hb_007416_300--Hb_008453_140 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_003929_170 Hb_003929_170 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.91381 10.4262 8.81022 14.5543 15.2636 9.59769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3666 7.0041 9.08918 5.62783 5.30016

CAGE analysis