Hb_013738_020

Information

Type -
Description -
Location Contig13738: 24161-25108
Sequence    

Annotation

kegg
ID tcc:TCM_007702
description RING/U-box superfamily protein, putative
nr
ID XP_012072845.1
description PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067KMS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05980 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10318: 16819-25167 , PASA_asmbl_10319: 16819-25167 , PASA_asmbl_10320: 24003-25167
cDNA
(Sanger)
(ID:Location)		 004_I12.ab1: 24362-25153 , 036_C02.ab1: 24331-25153

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013738_020 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
2 Hb_000116_450 0.0615040018 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
3 Hb_000220_010 0.065369583 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
4 Hb_000705_170 0.0667102498 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
5 Hb_002936_010 0.0672892402 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
6 Hb_004990_010 0.0673856857 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
7 Hb_002110_080 0.0678098071 - - FH interacting protein 1 [Theobroma cacao]
8 Hb_000025_180 0.0683488665 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
9 Hb_002026_210 0.0704046282 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
10 Hb_002205_110 0.0712026079 - - conserved hypothetical protein [Ricinus communis]
11 Hb_028512_020 0.0713532617 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
12 Hb_000923_010 0.0729498298 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
13 Hb_000028_370 0.0729684104 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
14 Hb_001357_150 0.0741094258 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
15 Hb_000120_170 0.0743747827 - - selenoprotein [Populus trichocarpa]
16 Hb_004117_110 0.0766802534 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
17 Hb_001408_040 0.077029555 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
18 Hb_093458_040 0.0775715946 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
19 Hb_001221_110 0.0781492558 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
20 Hb_024958_010 0.0781687183 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]

Gene co-expression network

sample Hb_013738_020 Hb_013738_020 Hb_000116_450 Hb_000116_450 Hb_013738_020--Hb_000116_450 Hb_000220_010 Hb_000220_010 Hb_013738_020--Hb_000220_010 Hb_000705_170 Hb_000705_170 Hb_013738_020--Hb_000705_170 Hb_002936_010 Hb_002936_010 Hb_013738_020--Hb_002936_010 Hb_004990_010 Hb_004990_010 Hb_013738_020--Hb_004990_010 Hb_002110_080 Hb_002110_080 Hb_013738_020--Hb_002110_080 Hb_000340_530 Hb_000340_530 Hb_000116_450--Hb_000340_530 Hb_002374_370 Hb_002374_370 Hb_000116_450--Hb_002374_370 Hb_003938_090 Hb_003938_090 Hb_000116_450--Hb_003938_090 Hb_093458_040 Hb_093458_040 Hb_000116_450--Hb_093458_040 Hb_000258_070 Hb_000258_070 Hb_000116_450--Hb_000258_070 Hb_008453_140 Hb_008453_140 Hb_000220_010--Hb_008453_140 Hb_007451_010 Hb_007451_010 Hb_000220_010--Hb_007451_010 Hb_014720_120 Hb_014720_120 Hb_000220_010--Hb_014720_120 Hb_010381_090 Hb_010381_090 Hb_000220_010--Hb_010381_090 Hb_120410_010 Hb_120410_010 Hb_000220_010--Hb_120410_010 Hb_002740_030 Hb_002740_030 Hb_000220_010--Hb_002740_030 Hb_000705_170--Hb_000116_450 Hb_000087_060 Hb_000087_060 Hb_000705_170--Hb_000087_060 Hb_005288_170 Hb_005288_170 Hb_000705_170--Hb_005288_170 Hb_000402_080 Hb_000402_080 Hb_000705_170--Hb_000402_080 Hb_000705_170--Hb_002110_080 Hb_024958_010 Hb_024958_010 Hb_002936_010--Hb_024958_010 Hb_006570_080 Hb_006570_080 Hb_002936_010--Hb_006570_080 Hb_001359_050 Hb_001359_050 Hb_002936_010--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_002936_010--Hb_005588_060 Hb_000720_040 Hb_000720_040 Hb_002936_010--Hb_000720_040 Hb_003994_230 Hb_003994_230 Hb_002936_010--Hb_003994_230 Hb_000260_350 Hb_000260_350 Hb_004990_010--Hb_000260_350 Hb_004990_010--Hb_093458_040 Hb_002989_020 Hb_002989_020 Hb_004990_010--Hb_002989_020 Hb_000487_270 Hb_000487_270 Hb_004990_010--Hb_000487_270 Hb_013399_020 Hb_013399_020 Hb_004990_010--Hb_013399_020 Hb_000948_230 Hb_000948_230 Hb_004990_010--Hb_000948_230 Hb_000029_060 Hb_000029_060 Hb_002110_080--Hb_000029_060 Hb_001481_060 Hb_001481_060 Hb_002110_080--Hb_001481_060 Hb_002492_010 Hb_002492_010 Hb_002110_080--Hb_002492_010 Hb_001716_020 Hb_001716_020 Hb_002110_080--Hb_001716_020 Hb_002110_080--Hb_000087_060 Hb_000962_030 Hb_000962_030 Hb_002110_080--Hb_000962_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.9256 74.3869 59.5902 90.7497 64.8598 66.8367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.6334 82.6719 43.2958 64.5572 42.8081

CAGE analysis