Hb_002110_080

Information

Type -
Description -
Location Contig2110: 94136-97964
Sequence    

Annotation

kegg
ID tcc:TCM_034468
description FH interacting protein 1
nr
ID XP_007018163.1
description FH interacting protein 1 [Theobroma cacao]
swissprot
ID Q9SE96
description GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1
trembl
ID A0A061FEP7
description FH interacting protein 1 OS=Theobroma cacao GN=TCM_034468 PE=4 SV=1
Gene Ontology
ID GO:0005622
description gem-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21853: 94141-97701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_080 0.0 - - FH interacting protein 1 [Theobroma cacao]
2 Hb_000029_060 0.0601406073 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
3 Hb_001481_060 0.0624372581 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
4 Hb_002492_010 0.0649694384 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
5 Hb_001716_020 0.0651830352 - - hydrolase, putative [Ricinus communis]
6 Hb_000087_060 0.0656485226 - - protein transporter, putative [Ricinus communis]
7 Hb_000962_030 0.0660760863 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
8 Hb_004990_010 0.0676926568 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
9 Hb_013738_020 0.0678098071 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_003906_200 0.0693567801 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
11 Hb_079326_020 0.0702926603 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002026_210 0.0715178796 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
13 Hb_001221_110 0.0715305308 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
14 Hb_011360_050 0.0731294715 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
15 Hb_005730_040 0.073163564 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
16 Hb_000327_140 0.0737923409 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
17 Hb_007248_030 0.0740754297 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
18 Hb_000116_450 0.0755610808 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
19 Hb_002232_480 0.0764615612 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
20 Hb_004143_100 0.0776541554 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002110_080 Hb_002110_080 Hb_000029_060 Hb_000029_060 Hb_002110_080--Hb_000029_060 Hb_001481_060 Hb_001481_060 Hb_002110_080--Hb_001481_060 Hb_002492_010 Hb_002492_010 Hb_002110_080--Hb_002492_010 Hb_001716_020 Hb_001716_020 Hb_002110_080--Hb_001716_020 Hb_000087_060 Hb_000087_060 Hb_002110_080--Hb_000087_060 Hb_000962_030 Hb_000962_030 Hb_002110_080--Hb_000962_030 Hb_003849_110 Hb_003849_110 Hb_000029_060--Hb_003849_110 Hb_000029_060--Hb_001716_020 Hb_004916_010 Hb_004916_010 Hb_000029_060--Hb_004916_010 Hb_000086_420 Hb_000086_420 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140 Hb_001481_060--Hb_001716_020 Hb_007248_030 Hb_007248_030 Hb_001481_060--Hb_007248_030 Hb_001481_060--Hb_002492_010 Hb_000345_160 Hb_000345_160 Hb_001481_060--Hb_000345_160 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_004037_020 Hb_004037_020 Hb_001481_060--Hb_004037_020 Hb_002492_010--Hb_001716_020 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_004143_100 Hb_004143_100 Hb_002492_010--Hb_004143_100 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_001114_110 Hb_001114_110 Hb_000962_030--Hb_001114_110 Hb_000962_030--Hb_001481_060 Hb_000962_030--Hb_007248_030 Hb_004705_170 Hb_004705_170 Hb_000962_030--Hb_004705_170 Hb_001405_210 Hb_001405_210 Hb_000962_030--Hb_001405_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7892 51.7704 38.8387 51.7569 29.0337 36.2026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.146 40.0742 27.2713 33.2878 32.7168

CAGE analysis